[Bio-linux-list] locating ncbi-tools-x11 lib folder

[Tony Travis]

On 23/02/16 16:55, Flavia Flaviani wrote:
> [...]
> locate it . I have locate the package but when I try 
> 
>         find / -name 'ncbi-tools-x11' 
> 
> I am still not able to locate the lib for the ncbi tools. (I have tried
> all various commands and options but with no success).
> 
> Did anyone had the same issue in the past? 
> Could anyone help? 

Hi, Flavia.

First, check that you have the package installed:

> dpkg -l ncbi-tools-x11
> Desired=Unknown/Install/Remove/Purge/Hold
> | Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend
> |/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad)
> ||/ Name                        Version            Architecture       Description
> +++-===========================-==================-==================-===========================================================
> ii  ncbi-tools-x11              6.1.20120620-7     amd64              NCBI libraries for biology applications (X-based utilities)

Then, check where the files are installed:

> dpkg -L ncbi-tools-x11
> /.
> /usr
> /usr/lib
> /usr/lib/mime
> /usr/lib/mime/packages
> /usr/lib/mime/packages/ncbi-tools-x11
> [...]

Or, you can find all the packages that installed 'ncbi-tools-x11':

> dpkg -S ncbi-tools-x11
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/authors.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/submit.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/firewall.html
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/changelog.Debian.gz
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/welcome.png
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:Cn3D-3.0.desktop
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/logo.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/annot.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/loc_page.png
> ncbi-tools-x11: /usr/share/lintian/overrides/ncbi-tools-x11
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/sequence.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucsing1.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/contact.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/affil.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/copyright
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/graphic.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/desktop.png
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:ddv.desktop
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucsing2.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/README.gz
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/README.sequin.gz
> ncbi-tools-x11: /usr/lib/mime/packages/ncbi-tools-x11
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/protein1.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/format.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/firedialog.gif
> ncbi-tools-x11: /usr/share/menu/ncbi-tools-x11
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/ncbi_sequin.css
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucset.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucaln.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/cds_edit.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/genbank.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/protein2.png
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:entrez2.desktop
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/update.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/validate.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/organism.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/props_pg.png
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:udv.desktop
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:Psequin.desktop
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/sequin.htm
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/net_cfg.png

You can also search the entire repository using:

> sudo -i
> apt update
> apt install apt-file
> apt-file update
> apt-file search ncbi-tools-x11
> ajt at beluga:~$ apt-file search ncbi-tools-x11
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:Cn3D-3.0.desktop
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:Psequin.desktop
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:ddv.desktop
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:entrez2.desktop
> app-install-data: /usr/share/app-install/desktop/ncbi-tools-x11:udv.desktop
> med-bio: /usr/share/blends/med/menu/ncbi-tools-x11
> ncbi-tools-x11: /usr/lib/mime/packages/ncbi-tools-x11
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/README.gz
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/README.sequin.gz
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/changelog.Debian.gz
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/copyright
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/firedialog.gif
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/firewall.html
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/affil.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/annot.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/authors.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/cds_edit.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/contact.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/desktop.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/format.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/genbank.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/graphic.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/loc_page.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/logo.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/ncbi_sequin.css
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/net_cfg.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucaln.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucset.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucsing1.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/nucsing2.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/organism.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/props_pg.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/protein1.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/protein2.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/sequence.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/submit.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/update.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/validate.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/images/welcome.png
> ncbi-tools-x11: /usr/share/doc/ncbi-tools-x11/sequin.htm
> ncbi-tools-x11: /usr/share/lintian/overrides/ncbi-tools-x11
> ncbi-tools-x11: /usr/share/menu/ncbi-tools-x11

HTH,

  Tony.

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