From tony.travis at minke-informatics.co.uk Sat May 26 16:56:57 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Sat, 26 May 2018 21:56:57 +0100 Subject: [Bio-linux-list] World Community Grid Message-ID: Hi, Please support the Bio-Linux team on the World Community Grid: > https://join.worldcommunitygrid.org?recruiterId=1053831&teamId=C0NXHND692 Thanks, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk From kissaj at miamioh.edu Sun May 27 07:01:02 2018 From: kissaj at miamioh.edu (Andor J Kiss) Date: Sun, 27 May 2018 07:01:02 -0400 Subject: [Bio-linux-list] FW: biolinux In-Reply-To: <71c9a275-2394-f884-4fb9-98a791a524f8@minke-informatics.co.uk> References: <71c9a275-2394-f884-4fb9-98a791a524f8@minke-informatics.co.uk> Message-ID: <1527418862.21978.16.camel@miamioh.edu> Hi Tony, Wow, this is great news. ?Do you need any help testing? ?Let me know if we can be of any help. Regards, -- ________________________________________________________________________________________________________________________ Andor J Kiss, PhD Director - Center for Bioinformatics & Functional Genomics 086 Pearson Hall - Miami University 700 East High Street, Oxford Ohio 45056 USA eMAIL:?KissAJ at MiamiOH.edu? Telephone: +1 (513) 529-4280 Fax: +1 (513) 529-2431 Ring ID:?andorjkiss URL (CBFG):?http://miamioh.edu/cas/academics/centers/cbfg/? URL (CBFG Services):?https://www.scienceexchange.com/labs/center-for-bioinformatics-functional-genomics URL (Research):?http://openwetware.org/wiki/User:Andor_J_Kiss? On Mon, 2018-04-16 at 12:29 +0100, Tony Travis wrote: > On 16/04/2018 09:13, Timms-Wilson, Tracey wrote: > > ? > > ? > > From: Stefan WECKX [mailto:Stefan.Weckx at vub.be]? > > Sent: 13 April 2018 09:21 > > To: Timms-Wilson, Tracey > > Subject: biolinux > > ? > > Dear colleague, > > ? > > As we are planning to setting up a new linux server for > > bioinformatics, I was wondering whether you have plans to release a > > BioLinux 9 based on Ubuntu 16.04 LTS? > > ? > ? > Hi, Stefan. > > Tracey forwarded your email to me and I've replied to the Bio-Linux > list in case anyone else has the sanme question. > > Yes, we are planning a release of Bio-Linux 9 but it will be based on > Ubuntu-MATE 18.04 LTS not 16.04. > > The new version of Bio-Linux will include many packages from the > Debian-Med team and will also have "Bioconda" pre-installed. > > You can upgrade Ubuntu 14.04 LTS to 16.04 in Bio-Linux 8, but many > package dependencies will be broken and I don't recommend doing the > upgrade unless you are willing to fix these dependency problems > yourself. I've upgraded a few instances of Bio-Linux 8 based on > Ubuntu 14.04 LTS to Ubunti 16.04 LTS and the upgrade is a lot > smoother now than it was. Please post your experiences here if you > decide to upgrade to Ubuntu 16.04. > > Thanks, > > ? Tony. > > > ??? ?This email has been checked for viruses > by AVG antivirus software.? > www.avg.com?? > > ?_______________________________________________ > Bio-Linux-list mailing list > Bio-Linux-list at bioinformatics.org > http://www.bioinformatics.org/mm/listinfo/bio-linux-list -------------- next part -------------- An HTML attachment was scrubbed... URL: From tony.travis at minke-informatics.co.uk Sun May 27 12:30:11 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Sun, 27 May 2018 17:30:11 +0100 Subject: [Bio-linux-list] FW: biolinux In-Reply-To: <1527418862.21978.16.camel@miamioh.edu> References: <71c9a275-2394-f884-4fb9-98a791a524f8@minke-informatics.co.uk> <1527418862.21978.16.camel@miamioh.edu> Message-ID: <8b0e7218-1e8f-6c52-af0b-6da488883bca@minke-informatics.co.uk> On 27/05/18 12:01, Andor J Kiss wrote: > Hi Tony, > > Wow, this is great news. ?Do you need any help testing? ?Let me know if > we can be of any help. > ________________________________________________________________________________________________________________________ > Andor J Kiss, PhD > Director - Center for Bioinformatics & Functional Genomics > 086 Pearson Hall - Miami University > 700 East High Street, Oxford > Ohio 45056 > USA > > eMAIL:?KissAJ at MiamiOH.edu ? > Telephone: +1 (513) 529-4280 > Fax: +1 (513) 529-2431 > Ring ID:?andorjkiss > > URL (CBFG):?http://miamioh.edu/cas/academics/centers/cbfg/? > URL (CBFG > Services):?https://www.scienceexchange.com/labs/center-for-bioinformatics-functional-genomics > URL (Research):?http://openwetware.org/wiki/User:Andor_J_Kiss? > > On Mon, 2018-04-16 at 12:29 +0100, Tony Travis wrote: >> [...] >> Yes, we are planning a release of Bio-Linux 9 but it will be based on >> Ubuntu-MATE 18.04 LTS not 16.04. >> >> The new version of Bio-Linux will include many packages from the >> Debian-Med team and will also have "Bioconda" pre-installed. Hi, Andor. Thanks for your kind offer - Yes, you can help by trying out Debian-Med packages under Ubuntu-MATE 18.04 LTS. The Debian-Med team have been busy moving their work to a new build-server and there is an Ubuntu PPA: > https://launchpad.net/ubuntu/bionic/amd64/med-bio Please CC any comments and bug reports to the Debian-Med mailing list. Thanks, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk From tony.travis at minke-informatics.co.uk Tue May 29 07:30:47 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Tue, 29 May 2018 12:30:47 +0100 Subject: [Bio-linux-list] =?utf-8?q?Environmental_Omics_=C2=BB_Bio-Linux_8?= =?utf-8?q?=2E0=2E8?= Message-ID: <39c1823d-2bec-12b3-ff72-af5a55c3c1f9@minke-informatics.co.uk> Hi, Here is a reminder about our Bio-Linux 8.0.8 point release: ? http://environmentalomics.org/bio-linux-8-0-8-2/ Please let anyone who might be interested know and post any comments to the bio-linux-list. Thanks, ? Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk