From tony.travis at minke-informatics.co.uk Sun Nov 4 20:56:27 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Mon, 5 Nov 2018 01:56:27 +0000 Subject: [Bio-linux-list] Bio-Linux 9 alpha on CyVerse Atmosphere Message-ID: <5b858c8b-e71d-e87f-b24a-1e83ce44d74a@minke-informatics.co.uk> Hi, I've created a public VM image of Bio-Linux 9 alpha (development) on CyVerse Atmosphere as "Bio-Linux-9-ajtravis-20181105": > https://atmo.cyverse.org/application/images/1596 You need an account on CyVerse with Atmosphere enabled to use it: > https://user.cyverse.org/register Bye, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk From tony.travis at minke-informatics.co.uk Thu Nov 8 11:02:33 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Thu, 8 Nov 2018 16:02:33 +0000 Subject: [Bio-linux-list] Bio-Linux 9 alpha on CyVerse Atmosphere In-Reply-To: <5b858c8b-e71d-e87f-b24a-1e83ce44d74a@minke-informatics.co.uk> References: <5b858c8b-e71d-e87f-b24a-1e83ce44d74a@minke-informatics.co.uk> Message-ID: On 05/11/2018 01:56, Tony Travis wrote: > Hi, > > I've created a public VM image of Bio-Linux 9 alpha (development) on > CyVerse Atmosphere as "Bio-Linux-9-ajtravis-20181105": > >> https://atmo.cyverse.org/application/images/1596 > > You need an account on CyVerse with Atmosphere enabled to use it: > >> https://user.cyverse.org/register Hi, There were problems with the image that prevented it booting properly. If you're interested in trying out an ALPHA release try: https://atmo.cyverse.org/application/images/1598 Thanks, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk From tony.travis at minke-informatics.co.uk Thu Nov 8 11:51:01 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Thu, 8 Nov 2018 16:51:01 +0000 Subject: [Bio-linux-list] Bio-Linux 9 alpha on CyVerse Atmosphere In-Reply-To: <54d86585-f26c-d4a2-982d-413be5783ad2@minke-informatics.co.uk> References: <5b858c8b-e71d-e87f-b24a-1e83ce44d74a@minke-informatics.co.uk> <54d86585-f26c-d4a2-982d-413be5783ad2@minke-informatics.co.uk> Message-ID: <0d51dc57-2338-54f9-4ea9-42378e0f5f9c@minke-informatics.co.uk> On 08/11/2018 16:00, Tony Travis wrote: > O[...] > Try: Bio-Linux-9-ajtravis-20181107, but don't use it for anything > important, because I'm still working on it. Hi, Simon. That version won't boot either - Not sure what is wrong: The instance they are trying to image is still running without any problems. We are still looking into the issue - I'll keep you posted. Sorry, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk From tony.travis at minke-informatics.co.uk Mon Nov 12 06:04:30 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Mon, 12 Nov 2018 11:04:30 +0000 Subject: [Bio-linux-list] Bio-Linux 9 alpha on CyVerse Atmosphere In-Reply-To: <0d51dc57-2338-54f9-4ea9-42378e0f5f9c@minke-informatics.co.uk> References: <5b858c8b-e71d-e87f-b24a-1e83ce44d74a@minke-informatics.co.uk> <54d86585-f26c-d4a2-982d-413be5783ad2@minke-informatics.co.uk> <0d51dc57-2338-54f9-4ea9-42378e0f5f9c@minke-informatics.co.uk> Message-ID: <112a0a00-ce48-c51b-fcfc-e35927bb4e73@minke-informatics.co.uk> On 08/11/2018 16:51, Tony Travis wrote: > On 08/11/2018 16:00, Tony Travis wrote: >> O[...] >> Try: Bio-Linux-9-ajtravis-20181107, but don't use it for anything >> important, because I'm still working on it. > > Hi, Simon. > > That version won't boot either - Not sure what is wrong: The instance > they are trying to image is still running without any problems. We are > still looking into the issue - I'll keep you posted. Hi, Looks like there is a problem imaging Ubuntu 18.04 instances generally on CyVerse Atmposphere, not just the problem with Bio-Linux 9-Alpha... Sorry about that - I'll post a message here if/when we find a solution. Meanwhile, I've created a public Ubuntu-MATE 16.04 + x2goserver image: > https://atmo.cyverse.org/application/images/1602 This is a step-up from the Bio-Linux 8 / Ubuntu 14.04 image, but I've not pre-installed any bioinformatics packages. I will as a temporary measure if we can't resolve the problems imaging Ubuntu-MATE 18.04. Bye, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk From tony.travis at minke-informatics.co.uk Mon Nov 19 08:04:22 2018 From: tony.travis at minke-informatics.co.uk (Tony Travis) Date: Mon, 19 Nov 2018 13:04:22 +0000 Subject: [Bio-linux-list] Bio-Linux 9 alpha on CyVerse Message-ID: Hi, I've created a public Bio-Linux 9-alpha image on CyVerse Atmosphere: > https://atmo.cyverse.org/application/images/1617 We were unable to image an instance based on Ubuntu-MATE 18.04 (Bionic) for some reason so, until we find out why, I've made a version based on Ubuntu-MATE 16.04 (Xenial) available instead. As before, this version comes pre-installed with "x2goserver", so you can connect to it with an "x2goclient" running on Windows, MacOS or Linux. Please note: The latest "x2goserver" requires an up-to-date "x2goclient" with matching ciphers. This version of Bio-Linux does NOT have a Bio-Linux theme but includes a full installation of "med-bio" and "med-bio-dev". The Bio-Linux USB will not have a complete installation of "med-bio" and "med-bio-dev", but a sub-set of the packages selected to match what was in Bio-Linux 8 as in my not-yet-completed Debian-Med "bio-linux-desktop" meta-package. Please post a message here if you try out the image on Atmosphere. Thanks, Tony. -- Minke Informatics Limited, Registered in Scotland - Company No. SC419028 Registered Office: 3 Donview, Bridge of Alford, AB33 8QJ, Scotland (UK) tel. +44(0)19755 63548 http://minke-informatics.co.uk mob. +44(0)7985 078324 mailto:tony.travis at minke-informatics.co.uk