[Bio-linux-list] FW: biolinux

[Simon Wagstaff]

Hi Tony,
We have an increasing number of people working with Galaxy on Biolinux 8. I understand that previous upgrades of Ubuntu break the BL version of Galaxy but I was wondering if there are plans to include Galaxy in the Bio-Linux 9 project?

Thanks,

Simon

-----Original Message-----
From: Bio-Linux-list [mailto:bio-linux-list-bounces at bioinformatics.org] On Behalf Of Tony Travis
Sent: 20 August 2018 10:42
To: Stefan WECKX <Stefan.Weckx at vub.be>
Cc: Bio-Linux mailing list <bio-linux-list at bioinformatics.org>; Debian Med Project List <debian-med at lists.debian.org>
Subject: Re: [Bio-linux-list] FW: biolinux

On 20/08/18 08:59, Stefan WECKX wrote:
> Hi Tony,
>
>
>
> Any update on the expected release date?

Hi, Stefan.

Sorry, I'm away on holiday in the French Pyranees just now, with only intermittent access to my email. I'll be working in Milan afterwards until 2 Oct before I look at the Bio-Linux 9 project seriously again.

I attended a Debian-Med Sprint in Barcelona in Feb where I gave a short presentation about my proposal to base Bio-Linux 9 on Ubuntu-MATE 18.04 LTS + Debian-Med with help from the Debian-Med team:

> https://wiki.debian.org/Sprints/2018/DebianMed2018

Will McAffery has been working hard to create a "bio-linux-desktop'
meta-package over the summer with help from the Debian-Med team and we've remastered the Ubuntu-MATE 18.04 LTS iso adding packages from Debian-Med's 'med-bio' task using "customizer":

> https://github.com/kamilion/customizer

At present, we've not yet been able to create a 'live' USB-stick with persistence, but we've tested using the 'live' stick without persistence and used it to install to single and "md" RAID hard disks successfully.

I can't give you a precise date for the release, but meanwhile it would be very useful if you and anyone else interested could let us know which packages from Bio-Linux 8 are the most useful/important to you?

The Debian-Med team have offered to help package any software that is included in Bio-Linux 8, but not available in Debian "Sid", which is what Ubuntu is based on.

I've CC'ed my reply to the Bio-Linux and Debian-Med mailing lists to keep everyone up-to-date with the current state of Bio-Linux 9.

Bye,

  Tony.

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