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<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>I’m trying to install Apache Axis libraries following
the instructions at:</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'><a
href="http://www.genome.jp/kegg/soap/doc/keggapi_manual.html#label:8">http://www.genome.jp/kegg/soap/doc/keggapi_manual.html#label:8</a></span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>I copy the libraries to /usr/local/java/lib/</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>And then try the first command mentioned on this page:</span></font></p>
<pre><font size=2 face="Courier New"><span style='font-size:10.0pt'>java -classpath /path/to/lib/axis.jar:/path/to/lib/jaxrpc.jar:/path/to/lib/commons-logging.jar:/path/to/lib/commons-discovery.jar:/path/to/lib/saaj.jar:/path/to/lib/wsdl4j.jar:. org.apache.axis.wsdl.WSDL2Java -p keggapi http://soap.genome.jp/KEGG.wsdl</span></font></pre>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>I then get an error:</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Exception in thread "main" java.lang.NoClassDefFoundError:
org.apache.commons.logging.LogFactory</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at org.apache.axis.components.logger.LogFactory.class$(LogFactory.java:45)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at
org.apache.axis.components.logger.LogFactory$1.run(LogFactory.java:45)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at java.security.AccessController.doPrivileged(Native
Method)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at org.apache.axis.components.logger.LogFactory.getLogFactory(LogFactory.java:41)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at org.apache.axis.components.logger.LogFactory.<clinit>(LogFactory.java:33)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at
org.apache.axis.i18n.ProjectResourceBundle.<clinit>(ProjectResourceBundle.java:53)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at
org.apache.axis.i18n.MessagesConstants.<clinit>(MessagesConstants.java:32)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at org.apache.axis.utils.Messages.<clinit>(Messages.java:36)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> at org.apache.axis.wsdl.WSDL2Java.<clinit>(WSDL2Java.java:112)</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Has anyone tried this installation, or do you have any
suggestions?</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Thanks</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'>Nathan</span></font></p>
<p class=MsoNormal><font size=2 face=Arial><span style='font-size:10.0pt;
font-family:Arial'> </span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>----------------------------------------------------------------------------------</span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>Dr. Nathan S. Haigh
MPharmacol. Ph.D.</span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>Bioinformatics PostDoctoral
Research Associate</span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=3
face="Times New Roman"><span style='font-size:12.0pt'> </span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>Room B2
211
Tel:
+44 (0)114 22 20112</span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>Department of Animal and
Plant Sciences
Mob: +44 (0)7742 533 569</span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>University</span></font><font
size=1 face="Courier New"><span style='font-size:8.0pt;font-family:"Courier New"'>
of </span></font><font size=1 face="Courier New"><span style='font-size:8.0pt;
font-family:"Courier New"'>Sheffield</span></font><font size=1
face="Courier New"><span style='font-size:8.0pt;font-family:"Courier New"'>
Fax: +44 (0)114 22 20002</span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>Western
Bank
Web: <a
href="http://www.bioinf.shef.ac.uk/">www.bioinf.shef.ac.uk</a></span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>Sheffield</span></font><font
size=1 face="Courier New"><span style='font-size:8.0pt;font-family:"Courier New"'>
<a href="http://www.petraea.shef.ac.uk">www.petraea.shef.ac.uk</a></span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>S10
2TN
</span></font></p>
<p class=MsoNormal style='text-align:justify'><font size=1 face="Courier New"><span
style='font-size:8.0pt;font-family:"Courier New"'>----------------------------------------------------------------------------------</span></font></p>
<p class=MsoNormal><font size=3 face="Times New Roman"><span style='font-size:
12.0pt'> </span></font></p>
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