<div dir="ltr"><font color="#3333ff">If you restart the Parallels VM, I assume you still see the login<br>manager where it asks for your password? If you click the icon next to<br>your name and choose "Gnome desktop (no effects)" can you log in and see<br>
an old-style menu bar and apps menu at the top?</font><br><br>Yes, at the top left I see "Applications" and "Places". I t has everything there.<div><br></div><div><div><font color="#3333ff">sumiti@ubuntu:~$ sudo apt-get dist-upgrade</font></div>
<div><br></div><div>[sudo] password for sumiti: </div><div>Reading package lists... Done</div><div>Building dependency tree </div><div>Reading state information... Done</div><div>Calculating upgrade... Done</div><div>
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.</div></div><div><br></div><div><div><font color="#3333ff">sumiti@ubuntu:~$ unity --replace</font></div><div><font color="#3333ff"><br></font></div><div>unity-panel-service: no process found</div>
<div>Checking if settings need to be migrated ...no</div><div>Checking if internal files need to be migrated ...no</div><div>Backend : gconf</div><div>Integration : true</div><div>Profile : unity</div><div>Adding plugins</div>
<div>Initializing core options...done</div><div>Initializing composite options...done</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libopengl.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'opengl'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libcompiztoolbox.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'compiztoolbox'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libdecor.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'decor'</div><div>Initializing vpswitch options...done</div><div>Initializing snap options...done</div><div>Initializing mousepoll options...done</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libresize.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'resize'</div><div>Initializing place options...done</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libmove.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'move'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libwall.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'wall'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libgrid.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'grid'</div><div>Initializing session options...done</div><div>Initializing gnomecompat options...done</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libanimation.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'animation'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libfade.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'fade'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libunitymtgrabhandles.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'unitymtgrabhandles'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libworkarounds.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'workarounds'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libscale.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'scale'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libexpo.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'expo'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libezoom.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'ezoom'</div><div>compiz (core) - Error: Couldn't load plugin '/usr/lib/compiz/libunityshell.so' : libGL.so.1: cannot open shared object file: No such file or directory</div>
<div>compiz (core) - Error: Couldn't load plugin 'unityshell'</div><div>Setting Update "main_menu_key"</div><div>Setting Update "run_key"</div></div><div><font color="#cc0000"><br></font></div>
<div><font color="#cc0000">window is stuck here</font></div><div><font color="#cc0000"><br></font></div><div><font color="#cc0000">Thanks</font></div><div><font color="#cc0000"><br></font></div><div><font color="#cc0000">Tauqeer</font></div>
<div><br><div class="gmail_quote">On Tue, May 21, 2013 at 12:10 PM, Tim Booth <span dir="ltr"><<a href="mailto:tbooth@ceh.ac.uk" target="_blank">tbooth@ceh.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Hi Tauqeer,<br>
<br>
That's not good! First thing is to see if you can get a fallback<br>
desktop. It's not really a fix but you will at least be able to use<br>
your Bio-Linux system.<br>
<br>
If you restart the Parallels VM, I assume you still see the login<br>
manager where it asks for your password? If you click the icon next to<br>
your name and choose "Gnome desktop (no effects)" can you log in and see<br>
an old-style menu bar and apps menu at the top?<br>
<br>
I'd like to see if the update process failed somehow and left the system<br>
in an inconsistent state. If you can get to the command line, can you<br>
run:<br>
<br>
sudo apt-get dist-upgrade<br>
<br>
What does it say?<br>
<br>
And finally, what happens if you then run:<br>
<br>
unity --replace<br>
<br>
Cheers,<br>
<br>
TIM<br>
<br>
On Tue, 2013-05-21 at 16:48 +0100, Tauqeer Alam wrote:<br>
> Hi Tim<br>
> I have BioLinux installed on my iMac through Parallels Virtual<br>
> Machine. Everything was working absolutely fine until today. This<br>
> morning, I ran update manager (from the left side panel) and now I do<br>
> not see my side and tope panel. I just see my desktop, nothing else.<br>
><br>
><br>
> Please help<br>
><br>
><br>
> Tauqeer<br>
<br>
--<br>
Tim Booth <<a href="mailto:tbooth@ceh.ac.uk">tbooth@ceh.ac.uk</a>><br>
NERC Environmental Bioinformatics Centre<br>
<br>
Centre for Ecology and Hydrology<br>
Maclean Bldg, Benson Lane<br>
Crowmarsh Gifford<br>
Wallingford, England<br>
OX10 8BB<br>
<br>
<a href="http://nebc.nerc.ac.uk" target="_blank">http://nebc.nerc.ac.uk</a><br>
<a href="tel:%2B44%201491%2069%202705" value="+441491692705">+44 1491 69 2705</a><br>
<br>
_______________________________________________<br>
Bio-Linux mailing list<br>
<a href="mailto:Bio-Linux@nebclists.nerc.ac.uk">Bio-Linux@nebclists.nerc.ac.uk</a><br>
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</blockquote></div><br><br clear="all"><div><br></div>-- <br><div dir="ltr"><div>*********************************************<br>Md Tauqeer Alam, Ph.D<br>Division of Infectious Diseases</div><div>Emory University School of Medicine</div>
<div>615 Michael Street, Atlanta, GA 30322, USA</div><div><a href="mailto:tauqeer9@gmail.com" target="_blank">tauqeer9@gmail.com</a><br></div></div>
</div></div>