<div dir="ltr">Dear Tim,<div><br></div><div>That's a very impressive script. Wow!</div><div><br></div><div>By going through the script I have cherry picked what looks like to be needed on a plain Ubuntu 12.04 64bit. I have attached it as a script. Can you verify that it is the correct procedure?</div>
<div><br></div><div>On the liveUSB I did</div><div><br></div><div>grep "^Packages: bio-linux" /var/lib/dpkg/status | awk '{print $2}'<br></div><div><br></div><div>and got the attached list of packages. On a successful installation, should I end up these exact packages?</div>
<div><br></div><div>Hugs,</div><div>Jasmine =)</div><div><br></div><div><br></div><div><br></div></div><div class="gmail_extra"><br><br><div class="gmail_quote">On 11 February 2014 19:54, Tim Booth <span dir="ltr"><<a href="mailto:tbooth@ceh.ac.uk" target="_blank">tbooth@ceh.ac.uk</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Jasmine,<br>
<br>
Installing all the bio-linux-* packages listed in the package manager is<br>
a bad idea, but you can install all the ones that come on the standard<br>
Bio-Linux installation by using the same script I made for Bio-Linux<br>
6->7 upgrades.<br>
<br>
Please see this page:<br>
<br>
<a href="http://nebc.nerc.ac.uk/tools/bio-linux/other-bl-docs/upgrade6-to-7" target="_blank">http://nebc.nerc.ac.uk/tools/bio-linux/other-bl-docs/upgrade6-to-7</a><br>
<br>
Cheers,<br>
<br>
TIM<br>
<div class="HOEnZb"><div class="h5"><br>
On Tue, 2014-02-11 at 13:29 +0000, Jasmine Lognnes wrote:<br>
> Hello all =)<br>
><br>
><br>
> The USB stick fails to boot on my netbook after the boot loader,<br>
> because it can't recognize the keyboard. So I tried to install ALL the<br>
> bio-linux packages on a Ubuntu 12.04 64bit, and ran into tons of<br>
> dependency issues.<br>
><br>
><br>
> Have anyone succeed in installing all the packages, and if so, how? =)<br>
><br>
><br>
> Hugs,<br>
> Jasmine<br>
><br>
><br>
><br>
><br>
<br>
</div></div><span class="HOEnZb"><font color="#888888">--<br>
Tim Booth <<a href="mailto:tbooth@ceh.ac.uk">tbooth@ceh.ac.uk</a>><br>
NERC Environmental Bioinformatics Centre<br>
<br>
Centre for Ecology and Hydrology<br>
Maclean Bldg, Benson Lane<br>
Crowmarsh Gifford<br>
Wallingford, England<br>
OX10 8BB<br>
<br>
<a href="http://nebc.nerc.ac.uk" target="_blank">http://nebc.nerc.ac.uk</a><br>
<a href="tel:%2B44%201491%2069%202705" value="+441491692705">+44 1491 69 2705</a><br>
</font></span></blockquote></div><br></div>