<div dir="ltr"><div><div><div>Hi Tim,<br></div>the problem is fixed! Thank you.<br><br></div>Cheers,<br></div>Tarcisio.<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Apr 9, 2015 at 2:01 PM, Tim Booth <span dir="ltr"><<a href="mailto:tbooth@ceh.ac.uk" target="_blank">tbooth@ceh.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Tarcisio,<br>
<br>
Thanks for the bug report. The package is on the C2D4U PPA which is<br>
activated by default on Bio-Linux machines which is why I didn't spot<br>
this problem before.<br>
<br>
I've copied the package over to the Bio-Linux PPA, so this problem<br>
should now be fixed, and you should be able to use QIIME without any<br>
further changes to your APT sources configuration. Is it working for<br>
you now?<br>
<br>
Cheers,<br>
<br>
TIM<br>
<div class="HOEnZb"><div class="h5"><br>
On Thu, 2015-04-09 at 11:13 +0100, Tarcisio Fedrizzi wrote:<br>
> Hello,<br>
><br>
> I write you because I have a problem with the dependencies of qiime.<br>
><br>
> I'm using ubuntu server 14.04 lts and I've added the repos for<br>
> biolinux 8:<br>
><br>
> deb <a href="http://nebc.nerc.ac.uk/bio-linux/" target="_blank">http://nebc.nerc.ac.uk/bio-linux/</a> unstable bio-linux deb<br>
> <a href="http://ppa.launchpad.net/nebc/bio-linux/ubuntu" target="_blank">http://ppa.launchpad.net/nebc/bio-linux/ubuntu</a> trusty main<br>
> deb-src <a href="http://ppa.launchpad.net/nebc/bio-linux/ubuntu" target="_blank">http://ppa.launchpad.net/nebc/bio-linux/ubuntu</a> trusty main<br>
><br>
><br>
> The problem with qiime 1.9 is that the package r-cran-optparse is<br>
> included neither in ubuntu nor in biolinux. I report this especially<br>
> because the trusty release is an LTS and maybe there are other users<br>
> that want to keep this release of ubuntu.<br>
><br>
><br>
> Thank you very much.<br>
><br>
> Best regards,<br>
><br>
> Tarcisio Fedrizzi.<br>
><br>
<br>
</div></div><span class="HOEnZb"><font color="#888888">--<br>
Tim Booth <<a href="mailto:tbooth@ceh.ac.uk">tbooth@ceh.ac.uk</a>><br>
NERC Environmental Bioinformatics Centre<br>
<br>
Centre for Ecology and Hydrology<br>
Maclean Bldg, Benson Lane<br>
Crowmarsh Gifford<br>
Wallingford, England<br>
OX10 8BB<br>
<br>
<a href="http://environmentalomics.org/bio-linux" target="_blank">http://environmentalomics.org/bio-linux</a><br>
<a href="tel:%2B44%201491%2069%202297" value="+441491692297">+44 1491 69 2297</a><br>
<br>
</font></span></blockquote></div><br></div>