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Hi Tim,<BR>
<BR>
That solved it!<BR>
<BR>
Thanks,<BR>
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__________________________________________________________________<BR>
Andor J Kiss, Supervisor<BR>
Center for Bioinformatics and Functional Genomics<BR>
086 Pearson Hall ~ Miami University<BR>
700 East High Street<BR>
Oxford, Ohio 45056<BR>
USA<BR>
<BR>
eMAIL: <A HREF="mailto:kissaj@muohio.edu">kissaj@MiamiOH.edu</A> <BR>
Telephone: +1 (513) 529-4280<BR>
Fax: +1 (513) 529-2431<BR>
URL (CBFG): <A HREF="http://www.cas.miamioh.edu/cbfg/ ">http://www.cas.miamioh.edu/cbfg/ </A> <BR>
URL (CBFG Services): <A HREF="https://www.scienceexchange.com/labs/center-for-bioinformatics-functional-genomics">https://www.scienceexchange.com/labs/center-for-bioinformatics-functional-genomics</A><BR>
URL (Research): <A HREF="http://openwetware.org/wiki/User:Andor_J_Kiss">http://openwetware.org/wiki/User:Andor_J_Kiss</A>
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On Wed, 2015-04-22 at 17:53 +0100, Tim Booth wrote:
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<PRE>
Hi Andor,
Looks like I neglected to update the "pyqi" library when I updated
QIIME. I've now pushed an updated package and the obvious error message
is gone. Could you please see if that fixes it for you?
Cheers,
TIM
On Tue, 2015-04-21 at 19:47 +0100, Andor J Kiss wrote:
> Hi,
>
> Trying to run the command biom summarize-table and I'm getting an
> error:
>
> biom
> [ 2:47PM]
> usage: biom <command> [<args>]
>
> The currently available commands are:
> add-metadata Add metadata to a BIOM table
> convert Convert to/from the BIOM table format
> normalize-table Normalize a BIOM table
> show-install-info Provide information about the biom-format
> installation
> subset-table Subset a BIOM table
> validate-table Validate a BIOM-formatted file
>
> The following commands could not be loaded:
> summarize-table Error: cannot import name
> write_or_print_list_of_strings
>
> Any ideas on how to fix?
>
> Thanks,
>
>
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