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<p>Dear Sir or Madam,<br>
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<p>I hope everything is well. I have downloaded all the viral protein sequences from the NCBI refseq database using their script from their E-book. I have de-novo assembled some viral genomes and I know BLASTX takes a long time if the fasta is large. I have
been able to split the large fasta file based on an user specified contig number in each new fasta file. </p>
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<p>I was wondering is there a method to run BLASTX automatically on each of the fasta files one at a time so that it will be able to complete in a "shorter" amount of time as compared to BLASTing the whole large de-novo assembled fasta file. Then I was hoping
to concatenate all the results into one file.<br>
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<p>Sincerely,<br>
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<p>Zain<br>
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