<html><body><div style="color:#000; background-color:#fff; font-family:HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif;font-size:12px"><div id="yui_3_16_0_1_1442229722057_3796">Tim Booth, thank you for what you do,</div><div id="yui_3_16_0_1_1442229722057_3863">I use Bio-Linux daily, yet only use a small fraction of its capabilities.</div><div><br></div><div>Brian<br></div><div id="yui_3_16_0_1_1442229722057_3795"><span></span></div> <br><div class="qtdSeparateBR"><br><br></div><div style="display: block;" class="yahoo_quoted"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 12px;"> <div style="font-family: HelveticaNeue, Helvetica Neue, Helvetica, Arial, Lucida Grande, sans-serif; font-size: 16px;"> <div dir="ltr"> <font face="Arial" size="2"> On Monday, September 14, 2015 6:42 AM, Tim Booth <tbooth@ceh.ac.uk> wrote:<br> </font> </div> <br><br> <div class="y_msg_container">Hi All,<br><br>I've been doing a round of package updates on Bio-Linux 8 over the last<br>week. We now have both Mothur and Mira updated to the latest versions:<br><br>mira-assembler package is version 4.9.5<br>mothur package is version 1.36.1<br><br>Both will be updated by the package updater. If you experience any<br>problems or regressions with these new packages please let me know.<br><br>I'm also pleased to say that the Trinity RNA-Seq De novo assembler has<br>been added to the package repository (<a href="http://trinityrnaseq.github.io/" target="_blank">http://trinityrnaseq.github.io/</a>).<br>Various modifications have been made to Trinity to make it integrate<br>nicely with the other packages on the system, so if you have problems<br>running it please let me know and I'll check if it is maybe something<br>that got messed up in the packaging.<br><br>trinityrnaseq package is version 2.0.6<br><br>To get it: sudo apt-get install trinityrnaseq<br>then just type: "Trinity" (with the capital T)<br><br>The credit for all this goes mainly to Michael and Andreas from the<br>Debian Med project who maintain these packages in Debian. I've been<br>able to take what they made and backport it to Bio-Linux for you.<br><br>Cheers,<br><br>TIM<br><br>-- <br>Tim Booth <<a ymailto="mailto:tbooth@ceh.ac.uk" href="mailto:tbooth@ceh.ac.uk">tbooth@ceh.ac.uk</a>><br><br>Centre for Ecology and Hydrology<br>Maclean Bldg, Benson Lane<br>Crowmarsh Gifford<br>Wallingford, England<br>OX10 8BB <br><br><a href="http://environmentalomics.org/bio-linux" target="_blank">http://environmentalomics.org/bio-linux</a><br>+44 1491 69 2297<br><br><br>_______________________________________________<br>Bio-Linux mailing list<br><a ymailto="mailto:Bio-Linux@nebclists.nerc.ac.uk" href="mailto:Bio-Linux@nebclists.nerc.ac.uk">Bio-Linux@nebclists.nerc.ac.uk</a><br><a href="http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux" target="_blank">http://nebclists.nerc.ac.uk/mailman/listinfo/bio-linux</a><br><br><br></div> </div> </div> </div></div></body></html>