<div dir="ltr">Thanks for the update !</div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, Sep 14, 2015 at 6:42 AM, Tim Booth <span dir="ltr"><<a href="mailto:tbooth@ceh.ac.uk" target="_blank">tbooth@ceh.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi All,<br>
<br>
I've been doing a round of package updates on Bio-Linux 8 over the last<br>
week. We now have both Mothur and Mira updated to the latest versions:<br>
<br>
mira-assembler package is version 4.9.5<br>
mothur package is version 1.36.1<br>
<br>
Both will be updated by the package updater. If you experience any<br>
problems or regressions with these new packages please let me know.<br>
<br>
I'm also pleased to say that the Trinity RNA-Seq De novo assembler has<br>
been added to the package repository (<a href="http://trinityrnaseq.github.io/" rel="noreferrer" target="_blank">http://trinityrnaseq.github.io/</a>).<br>
Various modifications have been made to Trinity to make it integrate<br>
nicely with the other packages on the system, so if you have problems<br>
running it please let me know and I'll check if it is maybe something<br>
that got messed up in the packaging.<br>
<br>
trinityrnaseq package is version 2.0.6<br>
<br>
To get it: sudo apt-get install trinityrnaseq<br>
then just type: "Trinity" (with the capital T)<br>
<br>
The credit for all this goes mainly to Michael and Andreas from the<br>
Debian Med project who maintain these packages in Debian. I've been<br>
able to take what they made and backport it to Bio-Linux for you.<br>
<br>
Cheers,<br>
<br>
TIM<br>
<br>
--<br>
Tim Booth <<a href="mailto:tbooth@ceh.ac.uk">tbooth@ceh.ac.uk</a>><br>
<br>
Centre for Ecology and Hydrology<br>
Maclean Bldg, Benson Lane<br>
Crowmarsh Gifford<br>
Wallingford, England<br>
OX10 8BB<br>
<br>
<a href="http://environmentalomics.org/bio-linux" rel="noreferrer" target="_blank">http://environmentalomics.org/bio-linux</a><br>
<a href="tel:%2B44%201491%2069%202297" value="+441491692297">+44 1491 69 2297</a><br>
<br>
<br>
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</blockquote></div><br><br clear="all"><div><br></div>-- <br><div class="gmail_signature"><div><font face="'comic sans ms', sans-serif">- Bish </font></div><div><font face="Comic Sans MS"></font> </div><div><img src="http://cndesigns.files.wordpress.com/2012/01/favim-com-1237.jpg" width="149" height="200"></div><div> </div></div>
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