<div dir="ltr"><div><div><div><div>Hi Tim,<br><br></div> I've added manually the Biolinux ppa. Adding also C2D4U ppa fixes. Thanks a lot.<br></div> Does the mentioned upgrade script add any other useful repository?<br><br></div>Regards,<br></div> Carlos<br></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Oct 1, 2015 at 7:12 AM, Tim Booth <span dir="ltr"><<a href="mailto:tbooth@ceh.ac.uk" target="_blank">tbooth@ceh.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Carlos,<br>
<br>
You should have the package available. On Bio-Linux 8 (Trusty) a bunch<br>
of R packages are provided by the C2D4U PPA repository. So on my system<br>
I can check it like this:<br>
<br>
tbooth@balisaur[tbooth] apt-cache policy r-cran-ape<br>
r-cran-ape:<br>
Installed: 3.3-1cran1ppa0<br>
Candidate: 3.3-1cran1ppa0<br>
Version table:<br>
*** 3.3-1cran1ppa0 0<br>
500 <a href="http://ppa.launchpad.net/marutter/c2d4u/ubuntu/" rel="noreferrer" target="_blank">http://ppa.launchpad.net/marutter/c2d4u/ubuntu/</a> trusty/main amd64 Packages<br>
100 /var/lib/dpkg/status<br>
<br>
If you installed Bio-Linux 8 directly or ran the upgrade8.sh script then<br>
this should have been set up for you, so either something has gone wrong<br>
or you have set up your software sources manually.<br>
<br>
I'd suggest you either re-run the upgrade script to add the repository<br>
configuration or else see<br>
<a href="https://launchpad.net/~marutter/+archive/ubuntu/c2d4u" rel="noreferrer" target="_blank">https://launchpad.net/~marutter/+archive/ubuntu/c2d4u</a> and follow the<br>
instructions for manually adding the repository. Note that you will<br>
also need to set up R core updates in order for these packages to work<br>
properly.<br>
<br>
Cheers,<br>
<br>
TIM<br>
<div><div class="h5"><br>
On Wed, 2015-09-30 at 17:31 -0300, Carlos Morais wrote:<br>
> Hi,<br>
><br>
><br>
> Any reason why package r-cran-ape is not present in trusty? It is<br>
> on precise.<br>
><br>
><br>
> Regards,<br>
><br>
> Carlos<br>
><br>
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<br>
--<br>
Tim Booth <<a href="mailto:tbooth@ceh.ac.uk">tbooth@ceh.ac.uk</a>><br>
<br>
Centre for Ecology and Hydrology<br>
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