[BioBrew Users] Biobrew roll

[Humberto Ortiz Zuazaga]

Glen Otero <gotero at linuxprophet.com> wrote:

> Sweet! What's proml? Is it something we can add into BioBrew?

Maybe, it's part of the phylip package:

http://evolution.genetics.washington.edu/phylip/doc/proml.html

The license prohibits redistribution for profit:

The following copyright notice is intended to cover all source code, all
documentation, and all executable programs of the PHYLIP package.

 Copyright 1980-2004. University of Washington and Joseph
 Felsenstein. All rights reserved. Permission is granted to reproduce,
 perform, and modify these programs and documentation files. Permission
 is granted to distribute or provide access to these programs provided
 that this copyright notice is not removed, the programs are not
 integrated with or called by any product or service that generates
 revenue, and that your distribution of these documentation files and
 programs are free. Any modified versions of these materials that are
 distributed or accessible shall indicate that they are based on these
 program. Institutions of higher education are granted permission to
 distribute this material to their students and staff for a fee to
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 distribution of this program should be directed to license @
 u.washington.edu .

There are source and binary rpms for RedHat 9 and Fedora liked to from
the main phylip site:

http://www.biolinux.org/phylip.html

There is also an embassy package (EMBOSS interface) for some of the
phylip programs.

I just built the RPMS from the SRPMS, so if you can't include it,
perhaps I can host the binaries here.

--
Humberto Ortiz Zuazaga
Programmer-Archaeologist
High Performance Computing facility
University of Puerto Rico
http://www.hpcf.upr.edu/~humberto/
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