[BioBrew Users] Biobrew roll

[Glen Otero]

On Aug 30, 2004, at 5:48 PM, Humberto Ortiz Zuazaga wrote:

> Glen Otero <glen at callident.com> wrote:
>
>> PHYLIP and EMBOSS are already included in BioBrew. Are they not there
>> on the roll?
>
> You have EMBOSS 2.6.0 and what looks like the EMBASSY package for 
> phylip
> 3.573c. The proml program is not there, I guess it wasn't
> ported to emboss, or wasn't in the 3.573c release.
>
> I know EMBOSS 2.9.0 is already out, and I got proml in the phylip 3.61
> package. Isn't tracking package versions fun?

Ungh...

> The embassy versions of
> phylip are best for EMBOSS users, but for bioknoppix, we end up
> including both versions, for completeness.
>
> Is there an easy way to get all the biobrew packages in the path?

We should be able to do this. I've been wanting to upgrade many of the 
packages in BioBrew, but haven't had the time. I'll put phylip and 
EMBOSS at the top of the list with mpiBLAST.

Any other app requests for BioBrew?

Glen
>
> --
> Humberto Ortiz Zuazaga
> Programmer-Archaeologist
> High Performance Computing facility
> University of Puerto Rico
> http://www.hpcf.upr.edu/~humberto/
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>
Glen Otero, Ph.D.
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