[BioBrew Users] Fwd: Do anyone know how to resolve this error?

[shalini sharon]

Hi, Glen

I did as u said but I still face the same error .
Can u see and advise me on what might have gone wrong?

Rgs,Sharon

root at frontend-0 share]# dbreport machines
compute-0-0
[root at frontend-0 share]# /usr/local/mpich-vmi2/bin/mpirun -np 25 
/etc/machin/opt/BioBrew/NCBI/6.1.0/bin/mpiblast 
--config-file=/opt/BioBrew/NCBI/6.1.0/etc/mpiblast.conf -p blastn -d 
/usr/local/share/db/ecoli.nt -i /root/test.txt -o ./blast_results.txt
Warning: Command line arguments for program should be given
after the program name.  Assuming that 
--config-file=/opt/BioBrew/NCBI/6.1.0/etc/mpiblast.conf is a
command line argument for the program.
Warning: Command line arguments for program should be given
after the program name.  Assuming that -p is a
command line argument for the program.
Warning: Command line arguments for program should be given
after the program name.  Assuming that blastn is a
command line argument for the program.
Warning: Command line arguments for program should be given
after the program name.  Assuming that -d is a
command line argument for the program.
Warning: Command line arguments for program should be given
after the program name.  Assuming that /usr/local/share/db/ecoli.nt is a
command line argument for the program.
Warning: Command line arguments for program should be given
after the program name.  Assuming that -i is a
command line argument for the program.
Unrecognized argument /etc/machin/opt/BioBrew/NCBI/6.1.0/bin/mpiblast 
ignored.
Error: No machinefile specified.
You must specify a valid machinefile or populate the default machinefile:
/usr/local/mpich-vmi2/bin/../share/machines.list





>From: Glen Otero <gotero at linuxprophet.com>
>Reply-To: BioBrew-Users at bioinformatics.org
>To: BioBrew-Users at bioinformatics.org
>Subject: [BioBrew Users] Fwd: Do anyone know how to resolve this error?
>Date: Tue, 9 Mar 2004 00:08:19 -0800
>
>
>
>Begin forwarded message:
>
>>From: Glen Otero <gotero at linuxprophet.com>
>>Date: March 9, 2004 12:03:32 AM PST
>>To: "shalini sharon" <proclaim_jesus at hotmail.com>
>>Subject: Re: Do anyone know how to resolve this error?
>>
>>You need to populate the default machine file (machines.list) with the 
>>list of hostnames of the machines that you would like to run mpi jobs on. 
>>For example:
>>
>># Default machine list for mpirun.ch_vmi.  Newline delimited.
>>compute-0-0
>>compute-0-1
>>...
>>compute-0-(N-1)
>>
>>Running this command:
>>
>>dbreport machines > /usr/local/mpich-vmi2/share/machines.list
>>
>>will populate the machines.list with all of your compute nodes.
>>
>>Glen
>>
>>On Mar 8, 2004, at 11:53 PM, shalini sharon wrote:
>>
>>>
>>>Hi, Sharon here..
>>>
>>>  This is the ERROR I faced.
>>>
>>>  Error: No machilefile specified
>>>  You must specify a valid machinefile or populate the defauly 
>>>machinefile
>>>  /usr/local/mpich-vmi2/bin/../share/machines.list
>>>
>>>_________________________________________________________________
>>>Find gifts, buy online with MSN Shopping. http://shopping.msn.com.sg/
>>>
>>>
>>>
>>Glen Otero, Ph.D.
>>Linux Prophet
>>619.917.1772
>>
>>
>Glen Otero, Ph.D.
>Linux Prophet
>619.917.1772
>

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