On Mar 12, 2004, at 8:48 AM, Soumyadeep nandi wrote: >> Did you have to rebuild HMMER, or were you able to >> use it with pvm as >> it was in BioBrew? > > The pvm we were using in production mode was > HMMER-2.3.2 compiled with the intel compiler. What flags did you use to compile HMMER with the Intel compiler? We'll be offering the Intel compilers and tools in our distro soon. > We > eventually reloaded pvm 3.4.4 on the cluster from the > tar file we used in the production environment (a > loosely knit cluster of workstations in a computer > lab), and loaded the 2.3.2 version of HMMER which > works fine. The HMMER supplied (2.2g) somehow did not > work but we didn't bother troubleshooting it... > > On another track - > the lam seems to have a version conflict: lam-6.5.6-4 > is installed and runs with small test jobs. The > lam-mpi version in the /opt directory (and that shows > up with rpm -qa ) is lam-mpi-7.0.3-1> Is this a > problem? None of the gromacs mpi executables are > present and when we tried installing them they give an > execution error with a broken pipe. The lamboot with > the /opt/lam-mpi doesn't start. We're looking into this. Thanks for the info! Glen > > Regards, > Soumyadeep > > > __________________________________ > Do you Yahoo!? > Yahoo! Search - Find what youre looking for faster > http://search.yahoo.com > _______________________________________________ > BioBrew-Users mailing list > BioBrew-Users at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/BioBrew-Users > > Glen Otero, Ph.D. Linux Prophet 619.917.1772