[BioBrew Users] Trouble running mpiBlast

[Soumyadeep nandi]

Hi Glen,

> You're running BioBrew 1.0, correct?

We are using BioBrew 1.0 and isos are downloaded from
ftp://ftp.bay13.net/pub/BioBrew/.
Moreover, you have released version 3.0, that is
available in "Massachusetts, USA --
http://bioinformatics.org/ftp/biobrew/", should we
switch over to this latest version.

Regards,
Soumyadeep

--- Glen Otero <gotero at linuxprophet.com> wrote:
> Soumyadeep-
> 
> You're running BioBrew 1.0, correct?
> 
> Glen
> 
> On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote:
> 
> > --- Glen Otero <gotero at linuxprophet.com> wrote:
> >>> The pvm we were using in production mode was
> >>> HMMER-2.3.2 compiled with the intel compiler.
> >>
> >> What flags did you use to compile HMMER with the
> >> Intel compiler? We'll
> >> be offering the Intel compilers and tools in our
> >> distro soon.
> >
> > We used the precompiled version from the hmmer
> site -
> > here is the listing:
> >
> >  Intel GNU/Linux
> >     Download: hmmer-2.3.2.bin.intel-linux.tar.gz
> >     Or, as an RPM:
> hmmer-2.3.2-1static_pvm.i686.rpm
> >     Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2;
> > --enable-threads --enable-lfs --enable-pvm; CC=icc
> > CFLAGS="-O3 -axMKW -static"
> >     the RPM spec file is available: hmmer-pvm.spec
> >
> > Soumyadeep
> >
> > __________________________________
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> >
>
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> >
> >
> Glen Otero, Ph.D.
> Linux Prophet
> 619.917.1772
> 
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>
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