[BioBrew Users] Trouble running mpiBlast

[shalini sharon]

Hi, Glen

Can we know by when u will be able to send urs the rpms?

Thank U

Rgs, sharon


>From: Glen Otero <gotero at linuxprophet.com>
>Reply-To: BioBrew-Users at bioinformatics.org
>To: BioBrew-Users at bioinformatics.org
>Subject: Re: [BioBrew Users] Trouble running mpiBlast
>Date: Mon, 15 Mar 2004 12:19:01 -0800
>
>Soumyadeep-
>
>No need to switch over to BioBrew 3.0 just yet. We should be able to send 
>you new rpms for BLAST, lam-mpi, and vmi (if necessary) to take care of the 
>problems on 1.0.
>
>Glen
>
>On Mar 15, 2004, at 9:45 AM, Soumyadeep nandi wrote:
>
>>Hi Glen,
>>
>>>You're running BioBrew 1.0, correct?
>>
>>We are using BioBrew 1.0 and isos are downloaded from
>>ftp://ftp.bay13.net/pub/BioBrew/.
>>Moreover, you have released version 3.0, that is
>>available in "Massachusetts, USA --
>>http://bioinformatics.org/ftp/biobrew/", should we
>>switch over to this latest version.
>>
>>Regards,
>>Soumyadeep
>>
>>--- Glen Otero <gotero at linuxprophet.com> wrote:
>>>Soumyadeep-
>>>
>>>You're running BioBrew 1.0, correct?
>>>
>>>Glen
>>>
>>>On Mar 13, 2004, at 7:40 AM, Soumyadeep nandi wrote:
>>>
>>>>--- Glen Otero <gotero at linuxprophet.com> wrote:
>>>>>>The pvm we were using in production mode was
>>>>>>HMMER-2.3.2 compiled with the intel compiler.
>>>>>
>>>>>What flags did you use to compile HMMER with the
>>>>>Intel compiler? We'll
>>>>>be offering the Intel compilers and tools in our
>>>>>distro soon.
>>>>
>>>>We used the precompiled version from the hmmer
>>>site -
>>>>here is the listing:
>>>>
>>>>  Intel GNU/Linux
>>>>     Download: hmmer-2.3.2.bin.intel-linux.tar.gz
>>>>     Or, as an RPM:
>>>hmmer-2.3.2-1static_pvm.i686.rpm
>>>>     Dell 6450; 4xPIII/700/2; Red Hat Linux 7.2;
>>>>--enable-threads --enable-lfs --enable-pvm; CC=icc
>>>>CFLAGS="-O3 -axMKW -static"
>>>>     the RPM spec file is available: hmmer-pvm.spec
>>>>
>>>>Soumyadeep
>>>>
>>>>__________________________________
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>>>>_______________________________________________
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>>>>
>>>
>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>>>
>>>>
>>>Glen Otero, Ph.D.
>>>Linux Prophet
>>>619.917.1772
>>>
>>>_______________________________________________
>>>BioBrew-Users mailing list
>>>BioBrew-Users at bioinformatics.org
>>>
>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>
>>
>>__________________________________
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>>_______________________________________________
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>>https://bioinformatics.org/mailman/listinfo/BioBrew-Users
>>
>>
>Glen Otero, Ph.D.
>Linux Prophet
>619.917.1772
>
>_______________________________________________
>BioBrew-Users mailing list
>BioBrew-Users at bioinformatics.org
>https://bioinformatics.org/mailman/listinfo/BioBrew-Users

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