[BioBrew Users] Fixed modulefiles RPM or source?

[Glen Otero]

Hmmm... I'll have to take a closer look at EMBOSS soon.

Check this out:
http://www.cineca.it/HPSystems/Software/modules.html

On Oct 15, 2004, at 7:25 AM, Humberto Ortiz Zuazaga wrote:

>
> glen at callident.com said:
>
>>> The module files aren't actually being used, are they? I have none of
>>> the bioinformatics tools in my path, and can't run EMBOSS programs
>>> (library problems, ACD problems), because the environment isn't set 
>>> up
>>> for EMBOSS.
>
>> ACD problems?
>
> Yes
> --
> [humberto at espresso humberto]$ showdb
> -bash: showdb: command not found
>
> [humberto at espresso humberto]$ /opt/BioBrew/EMBOSS/2.6.0/bin/showdb
> /opt/BioBrew/EMBOSS/2.6.0/bin/showdb: error while loading shared 
> libraries:
> libnucleus.so.0: cannot open shared object file: No such file or 
> directory
>
> [humberto at espresso humberto]$ export 
> LD_LIBRARY_PATH=/opt/BioBrew/EMBOSS/2.6.0/
> lib
>
> [humberto at espresso humberto]$ /opt/BioBrew/EMBOSS/2.6.0/bin/showdb
>
>    EMBOSS An error in ajacd.c at line 1534:
> acdfile '/usr/src/redhat/BUILD/EMBOSS-2.6.0/emboss/acd/showdb.acd' not 
> opened
> --
> If you put the following statement into an .embossrc file, programs 
> will start
> to work.
>
> set emboss_acdroot /opt/BioBrew/EMBOSS/2.6.0/share/EMBOSS/acd
>
> This can also be set in a sitewide emboss.default fike, but I think 
> EMBOSS
> programs will look for it in 
> /usr/src/redhat/BUILD/EMBOSS-2.6.0/emboss/share/EM
> BOSS as well.
>
> This may be a configure/rpmbuild problem with EMBOSS, the admin guide 
> for
> EMBOSS says to pass an absolute path to --prefix or bad things can 
> happen.
>
>
>
Glen Otero, Ph.D.
Linux Prophet
619.917.1772