I'm experiencing this problem with installing the biobrew roll as well with rocks 3.1 as well. Glen Otero mentioned that this is likely due to a bug in the biobrew.xml file. Is there a fix available for this yet? Can anyone tell me what is *not* being installed when this error shows up? Thanks On Aug 30, 2004, at 10:37 AM, Humberto Ortiz Zuazaga wrote: > I'm testing the biobrew roll with rocks 3.1 > > http://ftp.bioinformatics.org/pub/biobrew/BioBrew-v3.0/roll-biobrew > -3.1.0-0.i38 > 6.iso > > I installed Rocks 3.1 base and the biobrew, hpc, sge, java rolls. > > When installing, each compute node complains that the Fasta package is > selected for installation but not available, and I select continue. > > After installation, sge jobs don't run, I get the following error in > the > standard error stream of each job: > > Bad : modifier in $ (/). > > Following some recommendations on the rocks mailing list archives, I > think I > found the problem: > > /etc/profile.d/z-biomodules.csh has a line that reads: > > setenv MODULEPATH $MODULEPATH:/opt/BioBrew/modulefiles > > this line causes the error. > > I think this file should read: > > -- > # Additional modules for biobrew > # > > if ( ${?MODULEPATH} ) then > setenv MODULEPATH "${MODULEPATH}:/opt/BioBrew/modulefiles" > else > setenv MODULEPATH "/opt/BioBrew/modulefiles" > endif > -- > > See for example the rocks-pythonpath.csh script. > > > Glen Otero, Ph.D. Linux Prophet 619.917.1772