[BioBrew Users] Fasta fix for roll-biobrew-3.1.0-0.i386.iso yet?

[Glen Otero]

Sorry for the delay. There isn't a new roll yet, but adding the rpm to  
the cluster is pretty easy:

1) Download the Fasta rpm (Fasta-3.4-1.cld.i386.rpm) from  
http://ftp.bioinformatics.org/pub/biobrew/rpms/
2) Place the rpm in /home/install/contrib/enterprise/3/public/i386/RPMS

As root:

3) cd /home/install
4) rm -rf rocks-dist
5) rocks-dist dist
6) since  /home/install/profiles/3.1.0/nodes/biobrew.xml already has  
the Fasta package listed (per your earlier email) you should be able to  
'shoot-node' a compute node and have the Fasta package installed
7) rpm -ivh  
/home/install/contrib/enterprise/3/public/i386/RPMS/Fasta-3.4 
-1.cld.i386.rpm to install Fasta on the frontend

Let me know how it goes!

Glen

On Sep 20, 2004, at 10:02 AM, Palidwor, Gareth wrote:

> Hi:
>
> Is there a fixed version of roll-biobrew-3.1.0-0.i386.iso available
> yet that has the missing fasta rpm?
> If not, can you recommend a workaround i.e. manual install of that rpm,
> or is the problem more complicated?
>
> Thanks
>
> gp
>
>> From: Glen Otero <gotero at linuxprophet.com>
>> Subject: Re: [BioBrew Users] Re: BioBrew-Users digest, Vol 1 #55 -
> 2 msgs
>> Date: Fri, 10 Sep 2004 10:19:08 -0700
>> To: BioBrew-Users at bioinformatics.org
>> Reply-To: BioBrew-Users at bioinformatics.org
>>
>>
>> On Sep 10, 2004, at 9:30 AM, Humberto Ortiz Zuazaga wrote:
>>
>>> I wrote:
>>>> Glen Otero <gotero at linuxprophet.com> wrote:
>>>>
>>>>> Is the Fasta rpm in the repository?
>>>>
>>>> In my install it is not there. The clustal rpms are.
>>>>
>>>> Are you sure it's in the roll?
>>>
>>> I just checked, and it's definitely not in
>>> roll-biobrew-3.1.0-0.i386.iso
>>
>> Thanks for checking that out. We've had problems incorporating that
>> package into the build process, since it always had to be built by
>> hand. I'll tinker with the build process to try and make a roll that
>> includes it.
>>
>> Sorry for the hassle.
>>
>> Glen
>
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>
Glen Otero, Ph.D.
Linux Prophet
619.917.1772