Glen Otero <gotero at linuxprophet.com> wrote: > We should take this discussion off the Rocks list and continue it on > the BioBrew list. Thanks for bringing the discussion here, I'll track down the ROCKS thread too. I've got a couple of notes on our experiences with mpiBLAST on our BioBrew 3.3 cluster: http://plone.hpcf.upr.edu/Members/humberto/Wiki_Folder.2003-07-17.5848/MPIBlastHowto Bottom line is: if you want to see a speedup don't ever use NFS. By the way, the problems with SGE and the shell (see comment in script) are due to a bug in the mrbayes rpm. More in a separate email.