[BioBrew Users] Possible error with 4.1.2 roll

[Jeremy Mann]

I upgraded the roll from 4.1.1 to 4.1.2 as you said yesterday:

1) insert the biobrew CD in the frontend node
2) cd /home/install
3) rocks-dist --install copyroll
4) rocks-dist dist
5) kroll biobrew > /tmp/install-biobrew.sh
6) chmod +x /tmp/install-biobrew.sh
7) /tmp/install-biobrew.sh

After doing this, I went to rebuild a node and the installer says it
can't find byacc-1.9-28. I issued a find command in /home/install and
that version of byacc is in the old 4.1.1 roll. I then went into
/home/install/rocks-dist/lan/i386/RedHat/RPMS and the symlink and
torrent is for byacc-1.9-29.

I was curious if I had to manually remove the 4.1.1 directory and
issue another rocks-dist dist to update the changes. Now that I've
already done that, the installer still wants to install the older
BioBrew roll.

On 5/23/06, Glen Otero <glen at callident.com> wrote:
> Jeremy-
>
> I'm not sure what's going on here. Can you explain what you're doing
> in more detail? What do you mean by deleting the directory and
> rebuilding with rocks-dist?
>
> Glen
>
>
> On May 23, 2006, at 7:07 AM, Jeremy Mann wrote:
>
> > I've upgraded our BioBrew roll from 4.1.1 to 4.1.2 following the
> > instructions from Glen Otero. When rebuilding an i386 node the
> > installer errors on byacc. It says it cannot find byacc-1.9.28. The
> > 4.1.2 roll has byacc-1.9.29. I still have the 4.1.1 roll, should I
> > delete that directory and rebuild with rocks-dist to fix this?
> >
> > --
> > Jeremy
> > _______________________________________________
> > BioBrew-Users mailing list
> > BioBrew-Users at bioinformatics.org
> > https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> >
> >
>
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-- 
Jeremy