[BioBrew Users] Possible error with 4.1.2 roll

[Jeremy Mann]

Now it errors that it can't find flex so something is wrong with this
roll, it keeps wanting to use the 4.1.1 non-existant roll.

On 5/23/06, Jeremy Mann <jeremymann at gmail.com> wrote:
> Me too. All I can do for now is comment out byacc in the three XML
> files, biobrew.xml, biobrew-compute.xml and biobrew-frontend.xml. I
> hope nothing important needs it.
>
> On 5/23/06, Glen Otero <glen at callident.com> wrote:
> > Oh crap. More rocks issues. I'm at a loss here. I'm sure there's a
> > way to make this work, but I don't know it off the top of my head.
> > You might try reinstalling the new roll now that you've removed
> > remains of the old one.
> >
> > Glen
> >
> > On May 23, 2006, at 9:42 AM, Jeremy Mann wrote:
> >
> > > I upgraded the roll from 4.1.1 to 4.1.2 as you said yesterday:
> > >
> > > 1) insert the biobrew CD in the frontend node
> > > 2) cd /home/install
> > > 3) rocks-dist --install copyroll
> > > 4) rocks-dist dist
> > > 5) kroll biobrew > /tmp/install-biobrew.sh
> > > 6) chmod +x /tmp/install-biobrew.sh
> > > 7) /tmp/install-biobrew.sh
> > >
> > > After doing this, I went to rebuild a node and the installer says it
> > > can't find byacc-1.9-28. I issued a find command in /home/install and
> > > that version of byacc is in the old 4.1.1 roll. I then went into
> > > /home/install/rocks-dist/lan/i386/RedHat/RPMS and the symlink and
> > > torrent is for byacc-1.9-29.
> > >
> > > I was curious if I had to manually remove the 4.1.1 directory and
> > > issue another rocks-dist dist to update the changes. Now that I've
> > > already done that, the installer still wants to install the older
> > > BioBrew roll.
> > >
> > > On 5/23/06, Glen Otero <glen at callident.com> wrote:
> > >> Jeremy-
> > >>
> > >> I'm not sure what's going on here. Can you explain what you're doing
> > >> in more detail? What do you mean by deleting the directory and
> > >> rebuilding with rocks-dist?
> > >>
> > >> Glen
> > >>
> > >>
> > >> On May 23, 2006, at 7:07 AM, Jeremy Mann wrote:
> > >>
> > >> > I've upgraded our BioBrew roll from 4.1.1 to 4.1.2 following the
> > >> > instructions from Glen Otero. When rebuilding an i386 node the
> > >> > installer errors on byacc. It says it cannot find byacc-1.9.28. The
> > >> > 4.1.2 roll has byacc-1.9.29. I still have the 4.1.1 roll, should I
> > >> > delete that directory and rebuild with rocks-dist to fix this?
> > >> >
> > >> > --
> > >> > Jeremy
> > >> > _______________________________________________
> > >> > BioBrew-Users mailing list
> > >> > BioBrew-Users at bioinformatics.org
> > >> > https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> > >> >
> > >> >
> > >>
> > >> _______________________________________________
> > >> BioBrew-Users mailing list
> > >> BioBrew-Users at bioinformatics.org
> > >> https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> > >>
> > >
> > >
> > > --
> > > Jeremy
> > > _______________________________________________
> > > BioBrew-Users mailing list
> > > BioBrew-Users at bioinformatics.org
> > > https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> > >
> > >
> >
> > _______________________________________________
> > BioBrew-Users mailing list
> > BioBrew-Users at bioinformatics.org
> > https://bioinformatics.org/mailman/listinfo/BioBrew-Users
> >
>
>
> --
> Jeremy
>


-- 
Jeremy