[Bioclusters] submit a job
bioinfo Gu
bioclusters@bioinformatics.org
Wed, 20 Nov 2002 07:18:39 -0800 (PST)
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Hi,
I have installed the gridengine on two machines. Here is my structure: one(athena) is master node(not execution node), another(apollo) is execution node. I have submit the simple.sh and sleeper.sh, both of them work fine. But I want to run my own jobs on gridengine. I have installed 'blastall' on both machine,
athena: /path/to/blastprogram/blastall
apollo: /path/to/blastprogram/blastall
these two paths are different.
I have checked the environmental variable for blastall program on execution node, it should be all right, but when I 'qsub blastall_script', it always give me some error about blastall program. so I doubt my environmental variable is not right under gridengine.
My question is when I run 'qsub blastall' on athena(master), which program should be invoke, blastall will take agvantage of the resource of each execution node, is it right? Suppose that I have more than one execution nodes, how can I explain the environmental variables(or other resources). I found somewhere, but now I can not remember.
Thank you very much.
Grace
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<P>Hi,</P>
<P>I have installed the gridengine on two machines. Here is my structure: one(athena) is master node(not execution node), another(apollo) is execution node. I have submit the simple.sh and sleeper.sh, both of them work fine. But I want to run my own jobs on gridengine. I have installed 'blastall' on both machine, </P>
<P>athena: /path/to/blastprogram/blastall</P>
<P>apollo: /path/to/blastprogram/blastall</P>
<P>these two paths are different. </P>
<P>I have checked the environmental variable for blastall program on execution node, it should be all right, but when I 'qsub blastall_script', it always give me some error about blastall program. so I doubt my environmental variable is not right under gridengine.</P>
<P>My question is when I run 'qsub blastall' on athena(master), which program should be invoke, blastall will take agvantage of the resource of each execution node, is it right? Suppose that I have more than one execution nodes, how can I explain the environmental variables(or other resources). I found somewhere, but now I can not remember.</P>
<P>Thank you very much.</P>
<P>Grace </P><p><br><hr size=1>Do you Yahoo!?<br>
<a href="http://rd.yahoo.com/hosting/mailsig/*http://webhosting.yahoo.com">Yahoo! Web Hosting</a> - Let the expert host your site
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