[Bioclusters] submit a job

bioinfo Gu bioclusters@bioinformatics.org
Wed, 20 Nov 2002 07:18:39 -0800 (PST)


--0-356377131-1037805519=:87174
Content-Type: text/plain; charset=us-ascii


Hi,

I have installed the gridengine on two machines. Here is my structure: one(athena) is master node(not execution node), another(apollo) is execution node. I have submit the simple.sh and sleeper.sh, both of them work fine. But I want to run my own jobs on gridengine. I have installed 'blastall' on both machine, 

athena: /path/to/blastprogram/blastall

apollo: /path/to/blastprogram/blastall

these two paths are different. 

I have checked the environmental variable for blastall program on execution node, it should be all right, but when I 'qsub blastall_script', it always give me some error about blastall program. so I doubt my environmental variable is not right under gridengine.

My question is when I run 'qsub blastall' on athena(master), which program should be invoke,  blastall will take agvantage of the resource of each execution node, is it right?  Suppose that I have more than one execution nodes, how can I explain the environmental variables(or other resources). I found somewhere, but now I can not remember.

Thank you very much.

Grace  



---------------------------------
Do you Yahoo!?
Yahoo! Web Hosting - Let the expert host your site
--0-356377131-1037805519=:87174
Content-Type: text/html; charset=us-ascii

<P>Hi,</P>
<P>I have installed the gridengine on two machines. Here is my structure: one(athena) is master node(not execution node), another(apollo) is execution node. I have submit the simple.sh and sleeper.sh,&nbsp;both of them work fine.&nbsp;But I want to run my own jobs on gridengine. I have&nbsp;installed 'blastall' on&nbsp;both machine, </P>
<P>athena: /path/to/blastprogram/blastall</P>
<P>apollo: /path/to/blastprogram/blastall</P>
<P>these two paths are different. </P>
<P>I have checked the environmental variable for blastall program on execution node, it should be all right, but when I 'qsub blastall_script', it always give me some error about blastall program. so I doubt my environmental variable is not right under gridengine.</P>
<P>My question is&nbsp;when I run 'qsub blastall' on athena(master), which program should be&nbsp;invoke,&nbsp;&nbsp;blastall will&nbsp;take agvantage of the resource of each execution node, is it right?&nbsp; Suppose&nbsp;that&nbsp;I have more than one execution nodes, how can I explain the environmental variables(or other resources). I&nbsp;found somewhere, but now I can not remember.</P>
<P>Thank you very much.</P>
<P>Grace&nbsp;&nbsp;</P><p><br><hr size=1>Do you Yahoo!?<br>
<a href="http://rd.yahoo.com/hosting/mailsig/*http://webhosting.yahoo.com">Yahoo! Web Hosting</a> - Let the expert host your site
--0-356377131-1037805519=:87174--