[Bioclusters] How can I make blast job running short time on Gridengine

[bioinfo Gu]

--0-1840481240-1037894894=:67832
Content-Type: text/plain; charset=us-ascii


Hi all,

I have two machines to install SGE. athena is master and excution host, apollo is only excution host. When I submit a job from master host with qsub, the job will be distributed to one of queue(one of host), and this job will be executed on this machinefor the whole process. I can not see Gridengine can save execution time when launch blast job on it.  how can I save blast running time on Gridengine, do I have to use Parallel Environment?

Also, how can I setup environmental variable for specific execution host in batch job script? For example: 

on one excution host: I need BLASTDB point to path1, on the second execution host, I want to set BLASTDB to path2, how can I do that?

Thank you very much in advance.

Grace



---------------------------------
Do you Yahoo!?
Yahoo! Mail Plus - Powerful. Affordable. Sign up now
--0-1840481240-1037894894=:67832
Content-Type: text/html; charset=us-ascii

<P>Hi all,</P>
<P>I have two machines to install SGE. athena is master and excution host, apollo is only excution host. When I submit a job from master host with qsub, the job will be distributed to one of queue(one of host), and this job will be executed on this machinefor the whole process. I can not see Gridengine can save execution time when launch blast job on it.&nbsp; how can I save blast running time on Gridengine, do I have to use Parallel Environment?</P>
<P>Also, how can I setup environmental variable for specific execution host in batch job script? For example: </P>
<P>on one excution host: I need&nbsp;BLASTDB point to path1, on the second execution host, I want to set&nbsp;BLASTDB to path2, how can I do that?</P>
<P>Thank you very much in advance.</P>
<P>Grace</P><p><br><hr size=1>Do you Yahoo!?<br>
<a href="http://rd.yahoo.com/mail/mailsig/*http://mailplus.yahoo.com">Yahoo! Mail Plus</a> - Powerful. Affordable. <a href="http://rd.yahoo.com/mail/mailsig/*http://mailplus.yahoo.com">Sign up now</a>
--0-1840481240-1037894894=:67832--