Hi Steve, > > We wanted to be able to house database splits locally on > each node since I did not want to rely on NFS to supply > the databases. This has worked well despite the > hassle ( a minimal one) of pushing out data to each node > after a new version of a database comes out. That's > soon to be automated - for example download the latest > version of nr, split it , formatdb each split, and push out > the splits to each cluster node. The script is easily written. > > We purchased Platform LSF 5.0 licenses to manage the > cluster and as a side benefit they had example Perl scripts > that provided working examples on how to split up target > databases and associated queries to take advantage of the > cluster thus economizing search time. There is nothing > particularly magic about these programs though they do work > well. You could certainly write your own or easily modify > theirs to suit your specific needs. Its also possible to > adapt the scripts for use with GridEngine or PBS. > Where can I find the example Perl scripts that you mentioned above? I cannot seems to find any under my LSF 5.0 installation. > Relative to software I also have tested out TurboGenomic's > TurboBlast and have recently been evaluating Paracel's > Blast product. Both of these have their strengths and > understand they are packages designed to do high throughput > blasting so there isn't really load management built in > to them. They are meant to benefit from a cluster environment > so you can quite easily use either with , for more about my > experiences with either of these products then drop me a line. > Are you able to share with me your experiences with both TurboGenomic's TurboBlast and Paracel's Blast? TIA. Regards Lai Loong-Fong Bioinformatics Institute Agency for Science, Technology And Research Singapore