[Bioclusters] mpiBLAST

[Joe Landman]

I am wondering if you need to be in the same directory as the database
when you run mpiformatdb  for it to not generate (null).



On Wed, 2003-05-14 at 16:46, Osborne, John wrote:
> >Note:  For some reason, I seem to remember needing to put a
> >"Data=/path/to/scoring/matrices" as the third line in mpiblast.conf.  I
> >make sure this is a shared path.
> >
> I put that in there as the 3rd line, it worked, but then I removed it and it
> still works.  Not sure what is going on, but it seems to find the PAM
> matrices now.  Can anybody else here testify as to whether they put it in
> the
> last line of mpiblast.conf?
> 
> >What was your original mpiformatdb line? 
> 
> mpiformatdb -f /usr/local/bioinformatics/etc/mpiblast.conf -N 20 -i
> /scratch/data/nr -o T -p T
> 
> My mpiblast.conf still has just the two lines pointing to the shared and
> local storage.  It was
> run from a bash shell script, and the offending null filled file was located
> where I ran
> the bash script from.
> 
>  -John
> 
> 
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-- 
Joseph Landman, Ph.D
Scalable Informatics LLC,
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