[Bioclusters] EMBL DB

LAI Loong Fong bioclusters@bioinformatics.org
Fri, 16 Apr 2004 07:56:59 +0600

I think the dump would be too big but the perl script to create the 
fasta from the dump at ebi would be great. We are using just a 4-way 
Sun box to do the blast but will distribute it out to a few G5 and 
Opteron boxes.

LAI Loong-Fong

On Apr 15, 2004, at 11:51 PM, Guenther Weberndorfer wrote:

> If you need the blast-db (ie. fasta file, formatdb) I can offer a dump
> from our local seqbase (holds embl rel 78),  or a small perl script 
> that
> creates the fasta from the dumps at ebi.
> But do you have a decent machine to do a blast in ALL Embl? or would it
> be sufficient to reduce it to certain organisms?
> On Thu, 2004-04-15 at 19:50, LAI Loong Fong wrote:
>> How do I create a blastable database of the embl databases from EBI?
>> TIA
>> LAI Loong-Fong
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> -- 
> Guenther Weberndorfer <guenther.weberndorfer@insilico.com>