[Bioclusters] Parallel assembling of a shotgun genome

[Joe Landman]

Hi Octavio:

   Have a look at SPS Phrap Suite at 
http://www.geospiza.com/tools/sps-phrap.htm .

Joe

Octavio Martínez de la Vega wrote:

>Hi,
>
>We are a genomic research center in México and we will be initiating the
>shotgun sequence of a large genome. Currently we do our bioinformatics
>in a 32 processor cluster, but we assemble (for example ESTs sequences)
>using Phrap and/or CAP3.
>The question is,
>Can I parallelize the assembling of a shotgun sequencing project to use
>the power of a cluster?
>
>Thanks in advance,
>
>Octavio.
>
>------------------------------------
>Octavio Martínez de la Vega
>Profesor Titular
>omartine@ira.cinvestav.mx
>  
>


-- 
Joseph Landman, Ph.D
Scalable Informatics LLC,
email: landman@scalableinformatics.com
web  : http://www.scalableinformatics.com
phone: +1 734 612 4615