[Bioclusters] RE: mpiblast 1.3 on Mac Xserve G5

Ian Yi-Feng Chang d49228002 at ym.edu.tw
Wed Dec 22 00:40:55 EST 2004


 
Dear All:

   
Did anyone had successfuly install mpiblast 1.3 on mac os x (Xserve G5)?
I've some problem to install it
I've compiled NCBI toolkit without error messages
 
$patch -p1 < ../mpiblast-1.3.0/ncbi_Oct2004_evalue.patch (within the 'ncbi'
directory)
$ncbi/make/makedis.csh
$./configure with the --disable-dependency-tracking
$./configure --disable-dependency-tracking
$./configure --with-ncbi=/usr/local/ncbi
$./configure --prefix=/usr/local/mpiblast
 
but when I build mpiblast, it response following messages
I also had check previous discussion about mpiblast 1.2.1, the they seems
sort of diffent
could anyone help me ?
 
ian chang
 
mpiBlast 1.3
NCBI Toolkit 200410 installed
gcc (GCC) 3.3 20030304
 
$make
make  all-am
if mpicc -DHAVE_CONFIG_H -I. -I. -I. -I../include/
-I/usr/local/ncbi/include/  -DUSING_MPI
-DINSTALL_PREFIX="\"/usr/local/mpiblast\""  -g -O2 -MT
mpiblast-blast_hooks.o -MD -MP -MF ".deps/mpiblast-blast_hooks.Tpo" -c -o
mpiblast-blast_hooks.o `test -f 'blast_hooks.c' || echo './'`blast_hooks.c;
\
then mv -f ".deps/mpiblast-blast_hooks.Tpo" ".deps/mpiblast-blast_hooks.Po";
else rm -f ".deps/mpiblast-blast_hooks.Tpo"; exit 1; fi
blast_hooks.c: In function `initBLAST':
blast_hooks.c:695: error: structure has no member named `query_adjustments'
blast_hooks.c:696: error: structure has no member named
`effective_db_lengths'
blast_hooks.c: In function `getQuery':
blast_hooks.c:747: error: structure has no member named `current_queryI'
blast_hooks.c: In function `runBLAST':
blast_hooks.c:1455: error: structure has no member named
`calculate_statistics_and_exit'
blast_hooks.c:1457: error: structure has no member named
`calculate_statistics_and_exit'
blast_hooks.c:1478: error: structure has no member named `current_queryI'
blast_hooks.c: In function `outputResults':
blast_hooks.c:1573: error: structure has no member named
`calculate_statistics_and_exit'
mpicc: No such file or directory
make[1]: *** [mpiblast-blast_hooks.o] Error 1
make: *** [all] Error 2

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