On Jul 14, 2004, at 10:51 PM, Joe Landman wrote: > On Thu, 2004-07-15 at 01:45, kenix y wrote: >> Regarding .ncbirc, where can I find it? >> As I can't seems to find it. > > You will need to create one where you run mpiblast, and in your home > directory. > > Here is an example: > > > [NCBI] > Data=../data > [BLAST] > BLASTDB=../db > > > edit the Data=../data line to point to the weight matrices. Glen, if > you are listening, are these already in biobrew? ,ncbirc is not set up in BioBrew, so you need to create that file. Here is how I typically set it up: [glen@frontend-0 glen]$ more .ncbirc [NCBI] Data=/opt/BioBrew/NCBI/6.1.0/data > > Then edit the BLASTDB=../db line to point to the database (ecoli.nt in > your case). > > You will need a copy of this in you home directory and in the directory > you run the mpiblast code. > > Joe > > ps: signing off for the night, will answer as I can in the morning. > >> >> _________________________________________________________________ >> Download games, logos, wallpapers and lots more at MSN Mobile! >> http://www.msn.com.sg/mobile/ >> >> _______________________________________________ >> Bioclusters maillist - Bioclusters@bioinformatics.org >> https://bioinformatics.org/mailman/listinfo/bioclusters > -- > Joseph Landman, Ph.D > Scalable Informatics LLC, > email: landman@scalableinformatics.com > web : http://scalableinformatics.com > phone: +1 734 612 4615 > > _______________________________________________ > Bioclusters maillist - Bioclusters@bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters > > Glen Otero, Ph.D. Linux Prophet 619.917.1772