Yes, I did. I ran /opt/BioBrew/NCBI/6.1.0/bin/mpiformatdb -f /home/bigcpuguest/mpiblast.conf -N 2 -i ecoli.nt -o T -p F Trying to break ecoli.nt (5MB) into 3 fragments of 2 MB Executing: formatdb -i ecoli.nt -o T -p F -v 2 Moving fragments to /mnt/pvfs mv: cannot stat 'ecoli.nt.nal': No such file or directory Created and moved 3 fragments. The only files produced in /mnt/pvfs is ecoli.nt.00.nhr ecoli.nt.01.nhr ecoli.nt.02.nhr ecoli.nt.00.nin ecoli.nt.01.nin ecoli.nt.02.nin ecoli.nt.00.nnd ecoli.nt.01.nnd ecoli.nt.02.nnd ecoli.nt.00.nni ecoli.nt.01.nni ecoli.nt.02.nni ecoli.nt.00.nsd ecoli.nt.01.nsd ecoli.nt.02.nsd ecoli.nt.00.nsi ecoli.nt.01.nsi ecoli.nt.02.nsi ecoli.nt.00.nsq ecoli.nt.01.nsq ecoli.nt.02.nsq ecoli.nt.dbs (null).nal The index files are in /mnt/pvfs, seven of them. I do not know what else is missing, is it something to do with ecoli.nt.nal? >From: Glen Otero <gotero@linuxprophet.com> >Reply-To: bioclusters@bioinformatics.org >To: bioclusters@bioinformatics.org >Subject: Re: [Bioclusters] (no subject) >Date: Mon, 19 Jul 2004 08:11:03 -0700 > >Did you run formatdb (mpiformatdb) in /mtn/pvfs? That will create the index >files. > >On Jul 18, 2004, at 11:32 PM, kenix y wrote: > >>It seems that my earlier error was due to the fact that I forgot to change >>the permission of /tmp/blast of my compute node, sorry for my >>absent-mindedness. >>After I did, I got this: >> >>[blastall] WARNING: ftsYRP,: Could not find index files for database >>/mnt/pvfs/ecoli.nt >>[blastall] WARNING: ftsYRP,: polARP,: Could not find index files for >>database /mnt/pvfs/ecoli.nt >>[blastall] WARNING: ftsYRP,: polARP,: metKRPB,: Could not find index files >>for database /mnt/pvfs/ecoli.nt >>[blastall] WARNING: ftsYRP,: polARP,: metKRPB,: dnaERP,: Could not find >>index files for database /mnt/pvfs/ecoli.nt >> >>I do have the index files (.nhr, .nin, .nsq, .nsd, .nsi, .nni, .nnd) in >>/mnt/pvfs, what else can I do? >> >> >>Thank you. >> _________________________________________________________________ Download games, logos, wallpapers and lots more at MSN Mobile! http://www.msn.com.sg/mobile/