On 6 May 2004, at 10:30 pm, James Cuff wrote: > Guy/Tim - did you ever deploy that HMMer PVM cluster we talked about > for the Pfam web site? That's still a watch this space. The PFAMers are still talking about doing some MPI/PVM stuff. Like you, I am still a sceptic. Having said that, some of the EBI chaps are running MPI clustalw -- not sure which one -- on the IBM blades, and claim to be getting decent performance out of it. That's GBit interconnect, as you know, and we limit them to 10 CPUs (i.e. 5 machines) per job. Haven't got as far as getting it to schedule sensibly with the network topology. LSF has a useful looking sc_topology.so mbschd plugin, but I've not found any docs for it yet. Tim - Dr Tim Cutts Informatics Systems Group Wellcome Trust Sanger Institute Hinxton, Cambridge, CB10 1SA, UK