[Bioclusters] error while running mpiblast
kalyani
kalyani at atc.tcs.co.in
Mon Feb 28 01:45:07 EST 2005
Hi all!
Iam running mpiblast with the following command.
mpirun -np 4 ~/bin/mpiblast -p blastp -d pir.fasta -i
/home/kalyani/hmmer-2.3.2/src/seq1 -o mpiblastoutput.txt
Iam getting the following error. Can any one of you help me in finding out
the
error. Iam attaching the .ncbirc file
Thanks in Advance
Kalyani
[blastall] ERROR: seq31: BlastKarlinBlkGappedCalc: PAM30 is a supported
matrix
[blastall] ERROR: seq31: BlastKarlinBlkGappedCalc: PAM70 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: èÑ is not a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM80 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM62 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM50 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM45 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: PAM250 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM62_20 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: BLOSUM90 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: PAM30 is a supported
matrix
[blastall] ERROR: seq32: BlastKarlinBlkGappedCalc: PAM70 is a supported
matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: â
is not a
supported
matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM80 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM50 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM45 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM250 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62_20 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM90 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM30 is a
supported
matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM70 is a
supported
matrix
2 0.0277332 Bailing out with signal 11
MPI: Program /home/kalyani/bin/mpiblast, Rank 2, Process 9189 called
MPI_Abort(<communicator>, 0)
MPI: --------stack traceback-------
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: â
is not a
supported
matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM80 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM50 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM45 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM250 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM62_20 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: BLOSUM90 is a
supported matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM30 is a
supported
matrix
[blastall] ERROR: lcl|tmpseq_0: BlastKarlinBlkGappedCalc: PAM70 is a
supported
matrix
3 0.0337366 Bailing out with signal 11
########### .nbirc file contains
[NCBI]
Data=/home/kalyani/toolkit/ncbi/data
[BLAST]
BLASTDB=/home/kalyani/toolkit/ncbi
BLASTMAT=/home/kalyani/toolkit/ncbi/data
[mpiBLAST]
Shared=/home/kalyani/toolkit/ncbi
Local=/home/kalyani/toolkit/ncbi
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