Folks- I'll start working on a new BioBrew roll for Rocks-4.0 when I get back from vacation in two weeks. Hopefully, I'll have a new roll by mid August. Mason--At what point in the steps detailed in the Roll developer's guide will I need to apply the changes you mentioned to the graph and nodes xml files? Glen On Jul 7, 2005, at 10:43 AM, mason j. katz wrote: > There were some Roll API changes from Rocks 3.3.0 to Rocks 4.0.0 so > I would expect it not to install. The BioBrew developers need to > spin a new version for Rocks 4.0.0. > > The specifics are (this is for Glen): The graph itself has changed > so the entry point may need to be modified for the new graph > structure. Also both the nodes and graph xml files have a line at > the top that says @GRAPH_DTD@ or @KICKSTART_DTD@ this entire line > needs to be removed for the new XML parser to work. We had these > in as placeholders and never used them, unfortunately the new XML > engine breaks with them. Also Glen, we are thinking more about a > bioroll for Rocks we should talk about the future of BioBrew, give > me a call sometime. > > -mjk > > On Jul 6, 2005, at 07:00 p, Alan Ng wrote: > > >> Has anyone tried inserting the Biobrew-3.3 roll on Rocks 4.0. >> Would be a >> nice stop-gap measure for some bioinformatics clusters we're >> running if >> it works >> >> "Leadership & Life-long Learning" >> >> Alan Ng >> Assistant Manager, Systems >> Linux Certified Professional >> Open Source Systems Sdn Bhd >> www.aldrix.net Tel: 6 03-8656 0139 Fax: 6 03-8656 0132 >> >> ------------------------------------------- >> >> "Carpe Diem: Seize the Day!!" >> >> >> >> Glen Otero wrote: >> >> >> >>> BioBrew rolls for x86 and x86_64 are available for Rocks-3.3. Rolls >>> for Rocks-4.0 are not available yet. The rolls contains BLAST, >>> mpiBLAST, HMMER, EMBOSS, ClustalW, Gromacs, wise, and Phylip >>> applications, among others. The main website is biobrew.org. >>> >>> Glen >>> >>> On Jul 1, 2005, at 7:00 AM, Kurata Sung wrote: >>> >>> >>> >>>> Hello >>>> >>>> I study faculty of Computer Engineer at Kasetsart >>>> University,Bangkok Thailand. >>>> I want information with bioinformatics roll on NPACI rock >>>> because my project do this. >>>> - What have bioinformatics roll on NPACI rock ?(example : >>>> biobrew(This is only bioinformatics roll on NPACI rock which I can >>>> find from Internet)) >>>> >>>> Thank you very much >>>> >>>> _________________________________________________________________ >>>> Express yourself instantly with MSN Messenger! Download today it's >>>> FREE! http://messenger.msn.click-url.com/go/onm00200471ave/ >>>> direct/01/ >>>> >>>> _______________________________________________ >>>> Bioclusters maillist - Bioclusters at bioinformatics.org >>>> https://bioinformatics.org/mailman/listinfo/bioclusters >>>> >>>> >>>> >>>> >>> >>> _______________________________________________ >>> Bioclusters maillist - Bioclusters at bioinformatics.org >>> https://bioinformatics.org/mailman/listinfo/bioclusters >>> >>> >> >> >> <alan.vcf> >> _______________________________________________ >> Bioclusters maillist - Bioclusters at bioinformatics.org >> https://bioinformatics.org/mailman/listinfo/bioclusters >> >> > > _______________________________________________ > Bioclusters maillist - Bioclusters at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters > >