Hey- this is great. I had done some similar work for a research project here at MCW a few years back (mostly using performance tools from NASA), but the work was lost when the sysadmin of the home I had everything blew the server away without any backups. Oooops. Regardless, the stuff I had developed was a bit too narrow, and what I just saw in your links appears to be good, and relatively portable, stuff. As soon as I have some time I'm going to give it a whirl. How will we address issues such as differences between MPI implementations, or other job schedulers (PBS PRO in our case) and such? I look forward to a repository of results; I'd be more than happy to submit them. I see something along the lines of what can be found at futuremark.com- a sort of gamers hardcore benchmarking submission database deal...... --Kent C. Brodie Medical College of Wisconsin > -----Original Message----- > From: bioclusters-bounces+brodie=mcw.edu at bioinformatics.org > [mailto:bioclusters-bounces+brodie=mcw.edu at bioinformatics.org] On Behalf > Of James Cuff > Sent: Thursday, June 23, 2005 11:08 AM > To: bioclusters at bioinformatics.org > Subject: [Bioclusters] topbiocluster.org > > > Ok, > > So I put my money where my mouth is, (well 50 bucks anyway) > > http://topbiocluster.org is alive > > (well once the DNS gets pushed everywhere that is, I only set it last > night, some of you may have to hang fire for a bit :-)) > > We all talk a lot on this list about which cluster this, that and the > other for application this that and the rest. I also saw the last top500 > list yesterday, and to be frank I'm all done with linpak, we do other > stuff, and it matters. > > There are two good benchmark tools I know of, both are currently listed on > the topbiocluster.org 'site', but I'm going to need a bit of help from > folk to actually get this thing off the ground. > > My first thoughts are we build a list of what is actually out there in > terms of bioclusters, bit like Glen's QA mail from the other day, then we > start to go about doing the benchmark gig. > > I'm also looking to the vendors a bit here (I know some of you folk hang > out in here :-)). Let me know off list if I'm opening up a can of worms, > or if you would like to help. I want to keep this open, but there are > often things best talked about off list... > > If we get this thing right it _will_ be a one stop shop for biocluster > performance. > > I really want to capture NFS/SAN/storage figures in here, we all know it's > not just about the number of CPUs. We really need to see if we can > capture the whole *cluster* performance, not just raw CPU horsepower... > > So, let's open this up, and lets get talking... > > - How can we best start to fill in this web site? > > - Would people be happy to submit figures about their cluster? > > - What numbers shall we use for ranking? What to run etc. > > - How do we capture storage aspects? > > I'm happy to do some of the grunt work here to collect information etc. > I guess it's best that we keep all the chat open on this list, and I'll > see what pops up. As things come in, I'll start to flesh out the website > soem more. Also, once we have a bit more of a scope as to what we will > actually rank, list and store, I'll be happpy to start on the mysql > database, and get things rocking. > > submit at topbiocluster.org will work to send things in so I can get them > into a database if we actually get going on it. > > Let's see what happens, this could be a bumpy ride, but it should be fun. > > "Cabin crew, doors to automatic and cross check!" > > So I guess the floor is now open... > > Best, > > J. > > _______________________________________________ > Bioclusters maillist - Bioclusters at bioinformatics.org > https://bioinformatics.org/mailman/listinfo/bioclusters