This talk of submitting jobs from perl to several different queueing systems reminds me of an issue I've been meaning to inquire about. Last I checked, InterProScan comes packaged with submission scripts for LSF, PBS, and SGE, but not condor. Is anybody out there successfully using InterProScan with a condor cluster? If so, would you be willing to share details of your setup and the glue code required to get InterProScan to submit condor jobs? I made a quick stab at a submission script but never had time to debug it. One may say "how hard can it be? It's just a small piece of glue code!" I seem to have run into a strange condor bug that the condor guys here at UW haven't been able to track down. Thanks, -Aaron Rayson Ho wrote: >If we can seperate the "intelligent" part and the LSF interface, it may >be more useful... > >And rewrite the LSF interface in DRMAA (DRMAA has the Perl bindings >already), then we can have it interface with Gridengine, Gridway, >PBSPro, or Condor. > >Rayson > > >--- Malay <mbasu at mail.nih.gov> wrote: > > >>Hi All: >> >>Sometimes back I wrote a perl module for submitting jobs to LSF que. >>The >>module is moderately intelligent. In can start,modify,que,delete jobs >>in >> LSF. It can also blacklist problematic nodes on the fly, and and >>kill >>and restart jobs automatically. >> >>My question is does anyone need this type of module, in that case, >>I'll >>clean up the code and write a documentation for it and make it >>public. >> >>-Malay >>mbasu 'at' ncbi.nlm.nih.gov >>_______________________________________________ >>Bioclusters maillist - Bioclusters at bioinformatics.org >>https://bioinformatics.org/mailman/listinfo/bioclusters >> >> >> > > > >__________________________________ >Do you Yahoo!? >Yahoo! Small Business - Try our new resources site! >http://smallbusiness.yahoo.com/resources/ >_______________________________________________ >Bioclusters maillist - Bioclusters at bioinformatics.org >https://bioinformatics.org/mailman/listinfo/bioclusters > >