[Bioclusters] mpiblast

Chuming Chen chen at musc.edu
Wed Mar 15 08:17:03 EST 2006

Hi all,

Does the query size of mpiblast effect the total performance?

It took about 17 seconds per sequence when I run 721  sequences  (542K) 
against 22G database.
But when I run 88532 sequences (47M) against the same database, it  took 
about 1 minute.

Can the performance be improved if the query sequence is in a  
relatively smaller size?

Thank you for your kind comments and suggestions.

Chuming Chen
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