[Bioclusters] Parallel Sequence Alignment tool

[Abhishek Pratap]

Hey Ognen

Thanks for sharing. Just wondering if you could recommend anything
good on how to convert single threaded programs into multiones.
Ofcourse if the base algorithm is compatible. Any good resource that
you would recommend ?

Thanks,
-Abhi

On Mon, Aug 24, 2009 at 8:25 AM, Ognen Duzlevski<maketo at sdf.lonestar.org> wrote:
> On Fri, 17 Jul 2009, slitster at rcn.com wrote:
>
>> Date: Fri, 17 Jul 2009 10:41:53 -0400 (EDT)
>> From: slitster at rcn.com
>> Reply-To: HPC in Bioinformatics <bioclusters at bioinformatics.org>
>> To: bioclusters at bioinformatics.org
>> Subject: [Bioclusters] Parallel Sequence Alignment tool
>>
>> Does anyone have recommnedations for a parallel sequence alignment tool
>>
>> User investigation so far has turned up clustalW-MPI, but it seams to be
>> using an older version of clustalW.
>
> I once wrote a multi-threaded version of clustalw - you can get it here:
> http://naniteworld.com/clustalw_smp-0.99-9.tar.gz
>
> Ognen
>
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