[Biococoa-dev] Base design

[Alexander Griekspoor]

Did you guys get my (very long) email in the end? I got a message dat 
the list moderator should approve it first because it was to long ;-) 
If not, I'll send it again, although Koen gave a nice summary already.
I would say that our setup could match that of BioJava as follows:
Symbol -> BCSymbol (which could be devided in BCAtomicSymbol, 
BCAmbigousSymbol/BCBasisSymbol)
Alphabet -> BCAlphabet
Symbollist -> BCSequence

Alex

Op 12-aug-04 om 3:00 heeft Koen van der Drift het volgende geschreven:

>
> On Aug 11, 2004, at 12:07 PM, John Timmer wrote:
>
>> BCSequenceDNABase -
>> An abstract superclass, allows for easy testing of a sequence for DNA
>> content.
>>
>
>
> I am not sure what this class would do. Is it to represent a sequence 
> of bases, or is it to represent one base? Maybe we should start with 
> the abstract BCSequence class, and the implementation of the singleton 
> pattern for symbols. After that we can write the various subclasses, 
> etc.
>
> - Koen.
>
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>
>
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                       ** Alexander Griekspoor **
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