[Biococoa-dev] BCSequence

[John Timmer]

>> 
>> I think we should also discuss on how to make the original BioCocoa
>> classes (I/O) compatible with the new classes. Do we maintain backward
>> compatibility, or do we start from scratch?
> 
> I think that's a pretty easy choice, as we don't know of anyone using
> BioCocoa at the moment, I think we should just start from scratch.
> Cheers,
> Alex

Since the I/O classes also deal with metadata about the sequence (especially
NCBI), I'd always viewed them as being one object layer up from the sequence
containers that we've been working on.

And I haven't had enough coffee yet this morning to consider methylation....

Cheers,

John


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