[Biococoa-dev] mass calculator bug
Koen van der Drift
kvddrift at earthlink.net
Sat Aug 28 16:50:26 EDT 2004
On Aug 28, 2004, at 11:13 AM, John Timmer wrote:
>> Is it possible to move all the rangeOfSubsequence variants that are
>> in BCSequeneDNA to BCSequence? I think the same code can be useful for
>> proteins as well.
> Please do!
Already running into one problem here. These methods call
"isRepresentedByBase" a couple of times. But that is only defined in
BCNucleotideSymbol, not in BCSymbol.
I can think of a few solutions:
1. Change the name to isRepresentedBySymbol, and put an empty method in
BCSymbol. I don;t think that the one in BCNucleotideSymbol gets called
then, because I am treating all symbols as BCSymbol
2. Add an extra line that tests if the symbol is a BCNucleotideSymbol,
and then excecute the line containing isRepresentedBySymbol.
I think the second one is the way to go, but it might bring additional
Any other ideas?
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