[Biococoa-dev] more ramblings
Alexander Griekspoor
a.griekspoor at nki.nl
Fri Dec 3 20:52:15 EST 2004
Op 3-dec-04 om 23:25 heeft Alexander Griekspoor het volgende geschreven:
>> So is it safe to say that gap and undefined are actually just
>> BCSymbols, not AA or base? In that case we can move their
>> representations to BCSymbosl and make a general undefined/gap
>> symbolset.
>
> Guess so yes, as gaps are needed in both protein and nucleotide
> alignments for example...
> Alex
Oops, I just thought of one small problem, an undefined symbol has a
different letter assigned in the DNA (N) vs the protein world (*). Is
this indeed a problem or is the undefined symbol different from the
"every aminoacid/ every base" symbol?
Alex
>
>
**************************************************************
** Alexander Griekspoor **
**************************************************************
The Netherlands Cancer Institute
Department of Tumorbiology (H4)
Plesmanlaan 121, 1066 CX, Amsterdam
Tel: + 31 20 - 512 2023
Fax: + 31 20 - 512 2029
AIM: mekentosj at mac.com
E-mail: a.griekspoor at nki.nl
Web: http://www.mekentosj.com
MacOS X: The power of UNIX with the simplicity of the Mac
***************************************************************
>
> _______________________________________________
> Biococoa-dev mailing list
> Biococoa-dev at bioinformatics.org
> https://bioinformatics.org/mailman/listinfo/biococoa-dev
>
>
*********************************************************
** Alexander Griekspoor **
*********************************************************
The Netherlands Cancer Institute
Department of Tumorbiology (H4)
Plesmanlaan 121, 1066 CX, Amsterdam
Tel: + 31 20 - 512 2023
Fax: + 31 20 - 512 2029
E-mail: a.griekspoor at nki.nl
AIM: mekentosj at mac.com
Web: http://www.mekentosj.com
EnzymeX - To cut or not to cut
http://www.mekentosj.com/enzymex
*********************************************************
More information about the Biococoa-dev
mailing list