[Biococoa-dev] more ramblings

[Alexander Griekspoor]

Op 3-dec-04 om 23:25 heeft Alexander Griekspoor het volgende geschreven:

>> So is it safe to say that gap and undefined are actually just 
>> BCSymbols, not AA or base? In that case we can move their 
>> representations to BCSymbosl and make a general undefined/gap 
>> symbolset.
>
> Guess so yes, as gaps are needed in both protein and nucleotide 
> alignments for example...
> Alex


Oops, I just thought of one small problem, an undefined symbol has a 
different letter assigned in the DNA (N) vs the protein world (*). Is 
this indeed a problem or is the undefined symbol different from the 
"every aminoacid/ every base" symbol?
Alex


>
>
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                         ** Alexander Griekspoor **
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                  The Netherlands Cancer Institute
                  Department of Tumorbiology (H4)
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*********************************************************
                     ** Alexander Griekspoor **
*********************************************************
               The Netherlands Cancer Institute
               Department of Tumorbiology (H4)
          Plesmanlaan 121, 1066 CX, Amsterdam
                   Tel:  + 31 20 - 512 2023
                   Fax:  + 31 20 - 512 2029
                   E-mail: a.griekspoor at nki.nl
	        AIM: mekentosj at mac.com
               Web: http://www.mekentosj.com

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