[Biococoa-dev] sequence wrappers

[Peter Schols]

Koen, this approach seems to make sense to me, although I'm not a 
specialist in this field.
cheers,
peter


On 14 Dec 2004, at 15:20, Alexander Griekspoor wrote:

> That's a good idea Koen, if the others agree feel free to implement 
> that... I'm strongly in favour of the BCSymbolList (in analogy with 
> the biojava framework). Another step closer to a single sequence 
> class, haha ;-)
> Alex
>
> Op 14-dec-04 om 2:18 heeft Koen van der Drift het volgende geschreven:
>
>> Hi,
>>
>> How about the following change in our class structure to accomodate 
>> the sequence wrapper nomenclature:
>>
>> We create a new, bare sequence class, which only function is to 
>> maintain an array of BCSymbols. A possible name is BCSimpleSequence 
>> or BCSymbolList, or whatever. Part of the current code in BCSequence 
>> could go in that class. Then we subclass that to BCSequence, which 
>> has annotations and features. This is then subclassed to the current 
>> subclasses. One advantage: no long ugly class names such as 
>> BCSequenceProteinAnnotated, etc.
>>
>>
>> cheers,
>>
>> - Koen.
>>
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>>
>>
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