[Biococoa-dev] sequence wrappers

Koen van der Drift kvddrift at earthlink.net
Thu Dec 16 06:19:34 EST 2004

On Dec 16, 2004, at 1:46 AM, Alexander Griekspoor wrote:

>> Actually, it should have sequenceType and symbolSet. Just not the 
>> annotations and features. So basically it's the same as the current 
>> BCSequence. The current BCSequence will then be promoted to a 
>> BCAnnotatedSequence, but without the name change.
> Exactly, that would be the idea; it's more a renaming of the current 
> BCSequence while we shifted the BCAnnotatedSequence in between the 
> original BCSequence and the BCAnnotatedSequence. Again, the real 
> question is whether we want the BCAnnotatedSequence be higher or lower 
> in the hierarchy compared to BCSequence....

Not sure what you mean here Alex, I thought the idea was to rename the 
yet unexisting BCAnnotatedSequence to BCSequence, so the new 
hiercharchy would be:

BCSymbolList -> BCSequence -> BCSequenceDNA, etc

instead of:

BCSequence -> BCAnnotatedSequence -> BCAnnotatedSequenceDNA, etc

- Koen.

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