[Biococoa-dev] BCSequenceReader

[Koen van der Drift]

Hi all,

I have added an initial attempt for a new class BCSequenceReader. I 
also added some code to the translation demo to test this. I am using 
the original code from Peter, so the code figures out what the format 
of the data is. For now I have only added a readFasta method. Fasta 
files (and other formats as well) can contain DNA sequences or protein 
sequences. But how do I figure out which of the two I am dealing with, 
so I can return the proper subclass of BCSequence? Any suggestions how 
to approach this?

thanks,

- Koen.