[Biococoa-dev] Translation

Koen van der Drift kvddrift at earthlink.net
Fri Sep 3 18:55:11 EDT 2004

On Sep 3, 2004, at 1:59 PM, John Timmer wrote:

> I've checked in some updated code, still using codons but having moved 
> a
> bunch of things into arrays, rather than using BCSequenceDNA objects.


I seem to be missing BCGeneticCodeName, I get a bunch of errors related 
to that. Did you forget to commit that file?

> The time is down by a bit, but not a whole lot (maybe about 10-15% - 
> it's
> just under .4 seconds now).  ObjC_msgSend is down to about 23%, and 
> testing
> whether a base in the codon represents one in the sequence is up to 
> about
> 17.5%.  Since that's the most important step, I view this as a bit of
> progress.

maybe you can speed up by changing this:

     [theOutput setString: [aString addSpacesToStringWithInterval:5]];

to this:

     [theOutput setString: aString];

- Koen.

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