[Biococoa-dev] I/O classes
Peter Schols
peter.schols at bio.kuleuven.be
Thu Apr 28 12:35:18 EDT 2005
Dear listers,
In the coming weeks, I'll finally have some time to resume my BioCocoa
work. Much has changed since I checked out the project last time and I
must say that I'm very impressed with the quality and the amount of
work being done. Congratulations on a job well done!
I've started BioCocoa as a very small framework just to parse and write
sequence file formats, so the main focus of my BC work will be on the
I/O classes. I have noticed that Koen has already updated BCReader to
the new architecture and it's now aptly called BCSequenceReader. If I'm
right, BCCreator has not been modified yet so it seems that I'll be
doing this. As some of you may know, I recently implemented Cocoa code
for a lot more bioinformatics file formats (such as BEAST XML,
Hennig86, Nona, Plain/Raw and TNT). If it's OK with you guys, I could
add this implementation to the I/O classes. Any ideas/comments are
welcome. Most of these formats are from the Phylogeny world, the area
I'm working in.
Additionally, for one of my own projects, I'm working on classes to
perform BLAST queries and return the results. They are far from
finished but if they seem useful, I'm willing to 'donate' them to the
BC project.
Anyway, as soon as I have done some real work, I'll post the .h and .m
files on the list so everyone can review them as I don't want to mess
with the CVS repository and commit something that breaks existing code
;-)
Peter
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